Colletes gigas: 122398929
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Entry
122398929 CDS
T07492
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cgig
Colletes gigas
Pathway
cgig03013
Nucleocytoplasmic transport
cgig03015
mRNA surveillance pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122398929
09122 Translation
03013 Nucleocytoplasmic transport
122398929
03015 mRNA surveillance pathway
122398929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122398929
03041 Spliceosome [BR:
cgig03041
]
122398929
03009 Ribosome biogenesis [BR:
cgig03009
]
122398929
03012 Translation factors [BR:
cgig03012
]
122398929
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122398929
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122398929
mRNA cycle factors
Stress granule specific factors
122398929
Spliceosome [BR:
cgig03041
]
Complex C
Other components
EJC/TREX
122398929
Ribosome biogenesis [BR:
cgig03009
]
Eukaryotic type
90S particles
Helicases
122398929
Translation factors [BR:
cgig03012
]
Eukaryotic type
Initiation factors
eIF-4
122398929
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
AAA_30
TniB
Utp25_C
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
122398929
NCBI-ProteinID:
XP_043255130
LinkDB
All DBs
Position
Unknown
AA seq
403 aa
AA seq
DB search
MAEAKSRRVAQTEDLSNVEFETSEDVEVIPTFDNMGLRDELLRGIYAYGFEKPSAIQQRS
IKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQVRETQVLVLSPTRELATQIQKVILA
LGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDE
SDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTL
EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMH
GDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS
GRFGRKGVSINFVKTDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcgaaatctcgtcgcgttgcacaaacagaagatttgtcaaatgttgaattt
gaaaccagtgaagatgtggaagttatcccgacattcgataatatggggctcagagatgaa
ttgttgcgtggaatttacgcttacggatttgagaaaccgtcggcaattcagcaacgatct
attaaacctataatgaaaggacgagatgtgatcgcacaagctcagtccggtactggtaaa
accgcaacgttctcaattgccattttacagtcgttagatacacaagtcagagaaactcaa
gtattagtattgtctcctacaagggaattagcaacgcaaatacagaaagttattttggcg
ttaggagattttatgaacgttcaatgtcatgcctgcattggaggcactaacctcggggag
gatatcagaaagctagattatgggcagcatgtagtatctggcacacctggcagagtgttt
gacatgataaaaaggagagttctcagaaccagagctataaaaatgttagttctggatgaa
tcagacgaaatgttaaacaagggtttcaaggaacaaatttatgatgtgtacagatactta
cctcctgcaacacaggttgtattagtgtctgcgacattaccgcacgaaattctggaaatg
acaagtaaattcatgacagatcctattcgtattcttgtcaaacgcgatgaattgacattg
gaaggaataaagcaattctttgttgctgtagaaagggaagaatggaagtttgatacgtta
tgcgacttgtatgatacattgacaataacacaagctgtaatattttgcaatacaaaacgt
aaagtagattggttaactgagaaaatgagggaggctaatttcacagtttgttctatgcac
ggagatatgccacaaaaagagagagacaacataatgaaagagttccggtctggtcaaagt
cgtgttttgatcacaaccgatgtgtgggcaagaggaatagacgtgcagcaagtgtccctt
gtgatcaattatgatctgcccaacaatcgtgagttatacattcatagaataggtcgttct
ggtcgttttggaaggaaaggtgtttccattaatttcgttaaaactgatgacataaggatt
ctccgagatatagagcaatattattcaacgcaaattgacgaaatgcccatgaatgtagcg
gacttaatatag
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