Colletes gigas: 122400039
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Entry
122400039 CDS
T07492
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cgig
Colletes gigas
Pathway
cgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122400039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122400039
03041 Spliceosome [BR:
cgig03041
]
122400039
03009 Ribosome biogenesis [BR:
cgig03009
]
122400039
03016 Transfer RNA biogenesis [BR:
cgig03016
]
122400039
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122400039
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122400039
Spliceosome [BR:
cgig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122400039
Complex C
U4/U6.U5 tri-SnRNP related factors
122400039
Ribosome biogenesis [BR:
cgig03009
]
Eukaryotic type
Pre-60S particles
Helicases
122400039
Transfer RNA biogenesis [BR:
cgig03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122400039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
122400039
NCBI-ProteinID:
XP_043257169
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MANFSEDLFDVFEETDDVVEVIPAPVRQKDFQISLNEKKTDPESGTKRDLETDASEIISK
KLRFDPVLEDINVEELAPRIKIHTIETIESCTHEVAVPPDYQYVPLESKQSKSAKEYKFV
LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKY
REFFEEFKDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRD
KSRGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQHY
IFPVGGDGIHLVVDETGQFKEENFNRAMAWLQHGDPAKGDTKGRKGGMRSSNSGHSNIFK
MVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDLNTIEEKKLVNEVFNNAMDVLNEEDR
RLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTV
LFTASRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVIGKAIVQGKP
DPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNKVKELQAAYNAVD
IDKYNQISSYHDIREQLDRLCTEFRSFLTKPEYLLPFLQPGRLVKVKNENEMFDWGIIVN
FKKKNPTNPTKENTAIIIDILLHISKESSKGCPVPCREGEEGDMEVVPVLHTLISQISSL
RLYYPKDLRPSDNRKSVLKTIQEVKKRFPDGPPLLNPITDMRIEDETFKDVVKKIEVLEE
RLYAHPFHKDPNINTLYEQFLHKDDLANQLKEAKLELKRAKSILQMDELKCRKRVLRRLA
YCTTSDVIELKGRVACELNGADELLMTEMIFNGLFNTLSVPQMIALISCFVCDDKSNEMP
KSTEELGGPLRQMQDLARRIAKVSTEANLELDEDSYVESFKPYLMDVVYAWSKGATFLQI
CKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggctaatttttctgaagacttgtttgacgttttcgaagaaacagatgatgtagtagag
gtaattccagccccagtaagacagaaggatttccagatatcattgaacgaaaaaaaaact
gatccagagagtgggacgaaacgagacttggaaactgatgctagtgaaataatttctaaa
aaattacgattcgatcctgtcttggaagatataaacgtagaagaattggcaccgcgtatt
aaaatacatactatagagacgatcgaatcgtgtacgcacgaagttgcagtaccaccggat
tatcaatatgtaccattggaaagtaaacaaagcaaatcagctaaggaatataaattcgtg
ctagatccttttcagaaggaagcaatattatgtatcgaaaacaatcaatccgttttggtt
tctgctcatacttcggctggtaaaactgttgttgcggagtatgccatagcatgttcgtta
agggataagcaaagagtgatttatacaactcctatcaaagcattaagtaatcaaaaatac
agagaattttttgaggaattcaaggatgttggcttagtaaccggagatgttacaattaat
ccaacagccagtgttcttatcatgactactgaaatcttaagaaacatgctttacagagga
tccgaggtaatgcgtgaagtcggttgggtaatctttgacgaaattcattatatgcgtgac
aaaagcagaggtgtcgtatgggaagaaacattaatattgttaccagacaatgtgcattat
gtatttctttccgctactatacctaatgcacggcaattcgtagagtgggtagcacattta
cataaacaaccgtgtcatgttgtttatacagactataggccgactcctttacaacattat
atatttcctgttggtggggatggaattcacttggttgtagatgaaacgggacaatttaaa
gaagaaaatttcaacagagcaatggcttggttgcaacacggcgatcctgctaaaggagat
acaaaaggtcgtaaaggagggatgcgctcctcaaattctggacattcgaatattttcaaa
atggtgaaaatgatcatggaaaggaactttgcacctgtaattatattcagcttttcaaaa
aaagattgcgaggtttatgcgatgcaaatggctaaattggatttaaatacaatagaagaa
aagaaattagtgaatgaagtttttaataatgctatggatgttcttaacgaagaagacagg
cgcttaccgcaggttgaaaatgtattaccacttttaagacgtggaataggaattcatcat
ggtggacttttacctatactgaaggaaactgtcgagatattgtttggcgaagggttaata
aaagcgctctttgcgacagaaacttttgcaatgggattaaatatgccagcgcgaacagtt
ctattcacagcatcgcgaaaattcgatggcaaagattttcgttggattacatctggtgaa
tatattcagatgtctggtcgagcgggcagaagaggtctagatgaaaaaggaatagtaata
ttaatgatagatgaacaagttagtccggtaattggcaaagcgattgtacaagggaaacca
gaccccattaattcagcatttcacttgacttacaatatggttttaaatcttctaagagtc
gaagaaattaatccggagtacatgcttgaaaggagtttttatcaattccaaaatcaagcc
tccattcctgatttatataacaaggtaaaagaattgcaagcggcgtataatgcggtggat
attgataagtataatcaaatatcgtcttaccatgacatacgtgaacaactcgatcgtctt
tgtaccgaatttcgatctttcttgacaaaaccagaatatttacttccattcctacaacct
ggaaggctagtaaaagtgaaaaatgagaatgaaatgtttgattggggtattattgtaaat
tttaaaaagaagaatcctacaaatccgacaaaagaaaacactgctatcattatagacatt
ttactccatatttctaaagagtctagcaaaggatgtccagtaccttgtcgcgaaggagaa
gagggtgacatggaagtagtccctgttttacacacactaatttcacaaataagttcactt
agattatactacccaaaagatttaagaccatccgacaacaggaaaagtgtattaaaaacg
atacaggaagtaaagaaaagatttccagacggaccaccgctactgaatcctattacagac
atgcgaatagaagatgaaacatttaaagatgtcgttaagaaaatcgaagtattggaagaa
agattatatgctcaccctttccataaggatcccaatataaatacattatacgaacaattt
ttgcataaagatgacttagctaatcagcttaaagaagcaaagttagaattgaaacgagcc
aaatcgatacttcaaatggatgaattaaaatgtagaaaacgagtgttacgaagattggct
tattgcacaacgtcagacgttatagaattaaaaggccgagtggcttgcgaactaaatgga
gctgatgaattgttaatgacggaaatgatttttaatggattatttaatacgttaagtgta
ccgcaaatgatagcattaattagttgttttgtttgtgacgataaatcgaacgaaatgcct
aaaagtaccgaggaattaggtggccctctaagacaaatgcaagatttggcccgcagaata
gcgaaagtatctacagaagctaatttagaattagacgaagactcatatgtggaaagtttt
aaaccatatctaatggatgttgtatatgcttggagtaaaggtgccactttcttacagatt
tgtaaaatgacagatgtatttgaaggttcaattatacgatgtatgcgtcgtttagaagaa
gttcttagacaattgtgtcaagcagcaaagaacattggaaacacggatttagagaataaa
ttcagcgaagcgattaaactcataaaacgtgatattgtctttgccgcatctttgtatcta
taa
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