Colletes gigas: 122400333
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Entry
122400333 CDS
T07492
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cgig
Colletes gigas
Pathway
cgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122400333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122400333
Enzymes [BR:
cgig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122400333
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122400333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_NFXL1
RRM_1
KH_BICC1_1st
Motif
Other DBs
NCBI-GeneID:
122400333
NCBI-ProteinID:
XP_043257667
LinkDB
All DBs
Position
Unknown
AA seq
576 aa
AA seq
DB search
MEVTRQNFQEVLTELDDILKTASFLGIDGEFTGLNSGPDAGVFDTPAQYYAKLRAGSMDF
LLVQLGLSVFTFDTETQKYNQRSYNFYIFPRPLNRAAPDCRFMCQASCISFLATQGFDFN
KLFMFGIPYLTASEEEKLLKRLEERQKARDEVAELVPIMDDDRPQIEEICSRIDEFIASE
AEELTIDKCNAFIRRLVYQEVKVRWPNKLRVESKSDCSGYSLVVQRSGSKEEEEQKETLR
REKEITEIKEAIGLSALLKKISESRKLIVGHNMLLDLCHIIHKFFGPLPESYLEFKSLVH
SLFPRILDTKVLCQSQQFKENVPSSNLSVLLKRVSQAPFNIPDVDSIGDRSYSTTTDKCH
EAGYDAYITGICFIALCNYLGSLQKPEVSIVLANSQLLNPFLNKLLIARLKDYPYVSLVG
KDPNPSRDHVFHITFPKEWKYSDISQLFSPFGGVYVSWLSDTSAYVALNRREQASAVAKN
LCKASTYRLQKYVEHQASLEINCNVGDRKRKLSSSEDVAVETGENSVSTNGAKKTQNEDE
WKVATGKRRRKRKYNDVDTAQVSDMKKAFAEVASWR
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgactcgccagaattttcaagaggtcctcacagaattggatgatattttgaaa
actgcttcgtttcttggaatcgatggagaattcacaggacttaattcagggcctgatgct
ggggttttcgatacacctgcccagtattatgcaaaactaagagcaggatccatggacttt
cttcttgtacaacttggcctgtctgtttttacatttgatacggaaacacaaaagtataat
cagcgatcgtacaatttttacatttttccacgtcccttgaatcgcgcagctccagactgc
aggttcatgtgtcaggcttcgtgtatatcatttttggccacgcagggtttcgattttaat
aaacttttcatgtttggtattccttacttaacggcaagcgaggaggagaagttgctaaag
cgattggaagagaggcaaaaagctagggacgaagtggcagaattggtacctattatggac
gatgatagacctcagattgaagaaatatgttcaagaatagacgagtttatcgcttccgaa
gcggaagaattgacgatagataagtgtaatgcttttattagacgactcgtgtatcaagaa
gtaaaagtgagatggccaaacaaattgagggtcgaaagtaaatccgattgttccggatat
agtctcgtagtacaaagatcggggagtaaagaagaagaagaacaaaaggaaacattgaga
agagagaaagaaataacagagatcaaagaggcaatcggattaagtgcacttttgaaaaaa
atttcagaatctaggaaattaatagttggacacaacatgttactagatctctgtcatata
atacataagttttttggacctttaccggagagttatctcgaatttaagtctctcgttcat
agtttatttcctagaattttagataccaaagtactttgccaatcacaacaattcaaggaa
aacgtaccatcgtcgaatttgagcgtactgctaaaaagggttagccaagcaccatttaac
attccggatgtggattctatcggtgatagaagttactccacaacgaccgataaatgtcac
gaggcgggttacgacgcatacattaccggaatatgtttcattgcattgtgcaattatctc
ggttccttacaaaagcctgaggtttcaatagttcttgcaaattcacaacttctcaatccc
tttctcaacaaacttctcatagcaaggttaaaagattatccctatgtgagcctagttgga
aaggatccaaaccctagcagagatcacgtgtttcatataacattcccgaaagagtggaaa
tatagcgatatttcgcaactgtttagtccatttggaggcgtgtacgtatcgtggttatcc
gacacatccgcgtatgtagcattaaatcgtcgtgagcaagccagcgcagtggcaaaaaat
ctatgtaaagcaagtacgtataggctacaaaaatatgtcgagcatcaagcatcgttagag
ataaactgcaatgtgggagatcgtaaaagaaagttatcttcgtccgaagatgtcgcggtg
gaaacgggggagaactcggtgtcgacgaacggcgcaaagaagacgcagaacgaggatgag
tggaaggtggccacagggaaacggcgccgaaagcggaagtacaatgacgttgacactgct
caagtatcggacatgaagaaggccttcgccgaagtggcctcttggcgttaa
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