Colletes gigas: 122400445
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Entry
122400445 CDS
T07492
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cgig
Colletes gigas
Pathway
cgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122400445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122400445
Enzymes [BR:
cgig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122400445
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122400445
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122400445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_9
Motif
Other DBs
NCBI-GeneID:
122400445
NCBI-ProteinID:
XP_043257855
LinkDB
All DBs
Position
Unknown
AA seq
547 aa
AA seq
DB search
MSRIHKDKYENSNPRRTHTFMSTEDANSGKKSYWPELEITGSIRNLSPNLWQLTHLTALY
LNDNSLQRIPSEIGRLVNLRTLDLSSNKLRSLPAELGDLIYLRELLLNQNYLRVLPYELG
KLFQLQVLGLQGNPLSKEVLSLYGEPSGTHKLLSYMLDNLQVTANHPPQRPWIPLTRPNR
TRPTCIFTVMCYNVLCDKYATRQMYGYCPSWALDWEYRKKGILDEIRHYAADIISLQEVE
TDQFYNFFLPELKHDGYDGIFSPKSRAKIMAESDRKYVDGCAIFYRTAKFTLIKEHLVEF
NQLAMANAEGSDNMLNRVMPKDNIGLAALLRTKEAAWDNGLPSDSAQIQQPILVCTAHIH
WDPEFCDVKLIQTMMLSNELRSILDQAGQSFRLGCKSDSSSVQLLLCGDFNSLPDSGVIE
FLTSGRVAADHRDFKDLTYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNFTFDFK
GIIDYIFYSKQSMVPLGLLGPLNADWFREHKVVGCPHPHVPSDHFPLLVEFEMTPIVGTS
NGLISRR
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcattcacaaggacaagtatgaaaattcaaacccacgtcgtactcacactttc
atgtccacagaggatgcaaactctgggaagaaatcttattggccggagttggagataaca
ggcagtataagaaatttgagcccaaacttatggcagttaactcatttgacagctttatat
ctcaacgacaatagtttgcaaaggataccatccgagattggacggttagtcaatttgcga
actttagatctcagtagcaacaaattacgcagtttaccagcagaactgggggacctcatc
tacctcagagaattgttattgaatcaaaattaccttcgcgtgttaccgtacgaactagga
aagttgttccagttacaagtgcttggacttcagggcaatccactcagcaaggaagtactg
tcactgtatggagaaccttctggaacccacaagctgctatcgtatatgctggacaactta
caagtgactgcaaaccatccgcctcagagaccctggataccattgacgaggccaaacagg
acgagaccaacatgtatattcacagtaatgtgttacaacgtgttgtgcgacaagtacgca
acacgacaaatgtacggatactgtccgagctgggcgctcgattgggaatatcggaaaaaa
ggaattctcgacgagatacgacattacgccgcggacattatcagtttgcaggaagtcgag
acagaccaattctacaattttttcctaccagagctcaaacacgacggttacgatgggatc
ttttcaccaaaatctcgggcaaagatcatggcggagagcgatcgtaaatacgtggacgga
tgcgccattttttacaggacggcgaaatttaccttgataaaagagcatttagtcgaattc
aatcagttggcaatggcgaacgcagaaggctctgacaacatgttgaatagagtgatgcca
aaagataatatcggactcgccgccctgcttaggacaaaggaagctgcttgggacaatggc
cttccatcagactcagcacaaattcaacaaccgattttagtttgcacagcacacatccac
tgggatccagagttttgtgatgttaaattaatacagacaatgatgctcagcaatgaatta
cgttccattttggaccaagctggtcagtcttttaggctaggctgcaagtccgactcttcc
agcgttcaattgttactttgtggtgacttcaattccttacctgattctggtgtaatcgaa
tttcttacatcgggacgagtagcggccgatcaccgtgattttaaagacttaacatacaaa
tcatgcttacaaaagatctctgggtgcgataaacctaatgaatttacccactcgtttaaa
ctcgcatctgcctatagtgaagatattatgccctatactaatttcacattcgatttcaaa
ggaataatagattacattttctactcgaaacaaagtatggtacctttgggacttttgggc
cctttaaacgcagattggtttagagaacacaaagtggtcggttgtccacatcctcacgtt
ccatctgatcattttccattattagtggaattcgaaatgacgccaatagtaggaacaagc
aatggtctgatctcaagaaggtag
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