Colletes gigas: 122400867
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Entry
122400867 CDS
T07492
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgig03016
]
122400867
Enzymes [BR:
cgig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122400867
Transfer RNA biogenesis [BR:
cgig03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122400867
Prokaryotic type
tRNA splicing ligases
122400867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
122400867
NCBI-ProteinID:
XP_043258532
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKISDTCWKIKKGFQPNMKVEGVFYVNNTLERLMFEELRNSCRPGAV
GGFLPGVKQIANVAALPGIVWRSIGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEEDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIN
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFKMSPDDLDMHVIYDVSHNIAKVE
EHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNIDYMDVLGKLEQQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtcaggcaatataacgaagaattaaagtatttagaaaagataagcgatacgtgc
tggaaaataaagaaaggtttccaacctaatatgaaagttgaaggtgtattttatgttaat
aatacactggaaaggttaatgtttgaggagctacgtaattcatgtagaccaggtgcagta
ggaggttttctcccaggtgtgaaacaaattgccaatgtggctgcccttcctggaattgta
tggagatctattggattgcctgatgtgcattctgggtatggttttgccattggtaatatg
gcagcatttgatatgaatgatccaaaatcaatagtgtctcctggtggagtaggatttgat
attaattgtggtgttcgtctattaagaactaatttatttgaagaggatgttttacctgtg
aaggaacaacttgcacaaagcatgtttgaccatattcctgttggtgttggttcaaaagga
atcataccaatgaatgctagagatttggaagaagctttggaaatgggcatggattggtcc
cttagagaaggctatatctgggcagaggataaagaacattgcgaggaatatggcagaatg
cttaatgcagattcttcaaaagtatcaatgagagctaagaaacgtgggcttccacaatta
ggaactttaggagcaggaaatcattatgctgagattcaggtagtcgaggagatctatgac
aaatgggctgcatgcaaaatgggtatcgaagagaaaggtcaaatttgcgtgatgattcat
tctggtagcagaggatttggtcatcaagttgcaactgacgcacttgtccaaatggagaaa
gctatgaaacgagataacattgaaactaatgatagacaattagcttgcgctcatatcaat
tcccaagaaggtcaagattacttaaaatcaatggcagcggctgcgaatttcgcgtgggtc
aatagaagttctatgacgtttcttagccgacaggcttttgcaaaacagttcaaaatgtct
cccgacgatttagatatgcatgttatatacgacgtatctcataatattgcgaaggtagaa
gaacacatagtcgagggtaaacagaaaacacttttagtgcacaggaagggatccacaaga
gcgtttccacctcatcatcctctaattccggtagattatcaattaacaggtcaaccagtt
ctgataggtggtactatgggaacatgtagttatgttcttactggaactgaacagggtatg
aaagaaacattcggatcgacatgtcacggcgcgggccgagctttgtctagagccaagtcg
cgtaggaacatagattacatggacgtgctaggaaaattagagcaacaaggaatatccatt
agggtcgcatcgccgaagttggtgatggaagaagcaccagaatcctataaaaatgtcacg
gatgttgtagatacgtgccacgcggcaggcatttctcggaagtgtattaaattaaggcca
atcgcagttattaaaggataa
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