Colletes gigas: 122401037
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Entry
122401037 CDS
T07492
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
cgig
Colletes gigas
Pathway
cgig03015
mRNA surveillance pathway
cgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122401037
09123 Folding, sorting and degradation
03018 RNA degradation
122401037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122401037
03041 Spliceosome [BR:
cgig03041
]
122401037
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122401037
mRNA cycle factors
Stress granule specific factors
122401037
Spliceosome [BR:
cgig03041
]
Complex C
Other components
Complex C specific factors
122401037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
Nup35_RRM_2
RRM_occluded
POP1_C
Motif
Other DBs
NCBI-GeneID:
122401037
NCBI-ProteinID:
XP_043258857
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MNPGAPNYHMVSLYVGDLHSEITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDMIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFS
AFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKER
EKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFE
DPDAAEQAVFELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYV
KNLDDSIDDERLRKEFSQFGTITSAKVMMEEGRSKGFGFVCFSAPEEATKAVTEMNGRII
ATKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGAAGNYFVPTIPQPQRFY
GPAQMTQIRATPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQASAMRNTLSAR
PITGQQAVGGANMQSRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMAIPAPTPVQQAVH
IQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPALTGKITGMLLEIDNSELLHMLE
HNESLKAKVEEAVAVLQAHQAKQAVASKKE
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgggagctccgaattatcatatggtctcgctttacgtgggggacctgcattct
gaaatcaccgaggcgatgctgttcgagaagttttcatcggctgggcccgtactctcgata
cgcgtctgccgtgatatgattacacgacgttcgctcggttatgcttatgtcaactttcag
caaccggctgatgccgaacgtgcactggacaccatgaactttgacatgataagggggcgg
cctattcgtataatgtggtctcaacgtgatccttctcttcgaaaatctggcgttggaaat
gtattcataaaaaatttagataaaaacatagacaataaagcaatgtacgacacattctct
gcttttggtaatatccttagttgcaaagtggctcaagacgaatctggtgtttccaaaggt
tatggttttgttcattttgaaaccgaagaagcagcaaataaatctattgataaagtcaat
ggcatgttgctaaatggaaaaaaggtatacgttggtaaattcatacctcgaaaagaacgt
gaaaaggaattgggagaaaaagccaagcttttcaccaatgtttacgtaaagaactttggg
gaagatatgacggatgataaacttaaagaaatgtttgaaaaatatgggaccatcaccagt
cataaagtaatgattaaagatgacggaaaatcacgaggttttggtttcgtagcttttgaa
gatcctgatgctgctgaacaagcagtgttcgaattaaatggaaaagaggttgccgaagga
aagtgtatgtacgtcggacgggcgcagaagaaagcggagcgtcaacaagaattgaagaga
aagttcgagcaattaaagatagagcgattaaatcgttatcagggtgtaaatctttatgta
aagaacttggatgatagcatagacgacgagcgattgcgcaaagaattttcacaattcggg
acaattacctcggctaaagttatgatggaggaagggcgtagcaaaggttttggattcgtc
tgtttctcggcacccgaggaagctaccaaagctgttacggagatgaacggtcgtataata
gctaccaaaccgttatatgtcgccctagctcagcgtaaagaagatcgtaaagcgcatctt
gcttctcaatacatgcaacgtttggcgaacatgcgaatgcaacaaatgggccaaatcttc
cagcctggtgctgctggaaattatttcgttcccactataccgcagccgcaaagattttac
ggacctgctcagatgacacagatacgtgcaacaccacgctggccggcgcaaccgaatcaa
gtacgacccaatgcgcaaactggaagttctggtttcgctacgatgcagggtccatttaga
gcagctccacgtgctcctactgctcaagctagtgctatgcgaaataccttatccgcgaga
cctatcactggtcaacaagcggtgggcggtgcaaatatgcaaagtcgttccatggctggt
ccagcagtgggagtttcagctcaaagccgtccgtcaaattacaaatacacttcgaacatg
cgtaatccaccacaagcaatggcaatccctgctcctactcctgttcagcaagctgttcat
attcaaggccaggaaccattaactgcctcgatgctggcagctgctccgcctcaagagcag
aaacaaatgttgggagagcgtctgttcccactgattcagtgtatgtatccggcacttact
ggaaaaataactggaatgttgttggagatcgacaactcggagctcctgcacatgttggag
cataacgaatcgctgaaagccaaggttgaggaggccgtagctgtattgcaggctcatcag
gccaaacaggctgtggcttctaaaaaagagtaa
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