Colletes gigas: 122401693
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Entry
122401693 CDS
T07492
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cgig
Colletes gigas
Pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122401693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122401693
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122401693
Spliceosome [BR:
cgig03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122401693
Complex B
122401693
Complex C
U2 SnRNP specific factors
122401693
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MscL
Cas3-like_C_2
Mito_fiss_reg
Motif
Other DBs
NCBI-GeneID:
122401693
NCBI-ProteinID:
XP_043259920
LinkDB
All DBs
Position
Unknown
AA seq
797 aa
AA seq
DB search
MCEAYVFRHYKTGLVCHKDNKENMSYHRGGGNKPKGFGFAGFQMSSTKRSGSNIPPPPPN
STLSKQGYHTMNSITENALSACWGMPKKRSKTEEEYFEDDDDTPASSLEYIPAPGSPTYE
LMKKSTPKADSDSEEDPLDAFMAGIDAEVKRNTYEAQLAEDERKEDKSKGFRADIDGEDD
EESYYRYMEENPTAGLQQEESDQEIEYDEDGNPIAPPKKKEIDPLPPIDHSEIQYESFEK
NFYNVHEEIANLNKEQIDDLRNTLGIKVSGPSPPNPVTSFGHFGFDDALIKAIRKNEYTQ
PTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPT
RELSQQIYQEARKFGKVYNIQVCCCYGGGSKWEQSKALEGGAEIVVATPGRMIDLVKMKA
TNLSRVTFLVLDEADRMFDMGFEPQVRSICNHVRSDRQTLLFSATFKKRVEKLARDVLTD
PVRIVQGDVGEANADVTQHVTVFNNNPTGKWTWLLQNLVEFLSAGSLLIFVTKKLNAEEL
ANNLKLKEFDVLLLHGDMDQVERNKVITAFKRKDVSTLVATDVAARGLDIPHIKTVVNYD
VARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLLDLAMQ
SSWFRKSRFKGGKGKSLNVGGAGLGFRGRPEVSSTSSGSTSSQGSKDISEVVKKLERHGP
GSDRLSAMKAAFRSQYNSQFRASSDHTWEQTITPPSVIMPPPPPMPPKPNTEPPRNQDNQ
ASNIAREKKRVRKSRWE
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgaggcatacgtatttcgacattataaaaccggactagtgtgtcacaaagataat
aaggaaaatatgagttatcatcgtggaggtggtaacaagccaaaaggctttggatttgct
ggctttcaaatgtctagcacaaaaagaagcggttctaatataccaccgcctcctccaaat
tctacattaagtaaacaagggtatcacactatgaactctattaccgagaatgccttatct
gcatgttggggcatgccaaagaaacgtagcaaaactgaagaagagtactttgaggatgat
gatgacactccagcatcttccctggaatatatcccagcccctggatctcctacttacgag
ctaatgaaaaagtcgactcctaaagcagatagcgacagcgaagaagatcctttggatgcc
ttcatggctggtatagatgcagaagtgaaaaggaatacttacgaagctcaactagccgaa
gacgagcgcaaagaagataagtctaaaggatttagggccgacattgacggagaagacgac
gaagagagttactacaggtatatggaggagaacccaactgctggtttacaacaagaagaa
tccgatcaggaaatcgagtacgatgaagacggaaaccctatagcaccaccaaaaaagaaa
gaaatcgatccacttcctccaatcgatcacagcgaaatacaatacgaatcgttcgagaaa
aatttttataacgttcacgaagaaatcgctaatttaaataaagaacaaatcgacgatttg
agaaatactttgggaatcaaagtgtcgggtccatctccaccgaacccggttaccagtttc
ggtcattttggtttcgacgatgcgttaataaaagccatcagaaaaaacgaatacacccaa
cccacccctattcaagctcaagctgtgcctgccgcgttgagtggcagggacataataggt
atagcaaagactggtagcggtaaaacagcggcctttatttggccaatgttggttcacatt
atggatcaacgagaactaaaggctggtgatggacccattggtctgattttggctccaaca
agagaattatctcagcagatctatcaagaagcacgaaagtttgggaaagtttacaatatt
caagtgtgttgttgttacggtggtggcagtaaatgggaacagagtaaagcgttggaagga
ggggcagaaattgtagttgcaacgccgggtagaatgatagatttggttaaaatgaaggca
acgaacttgagcagagtaacgtttctcgtgttggacgaagccgatagaatgttcgacatg
ggtttcgagccgcaagtacgttctatatgcaatcacgtgaggtcggacaggcaaacattg
ttgttcagtgcaactttcaaaaagagggtggaaaagcttgcgagggacgttttaacggat
cctgttagaatagttcagggggacgtcggtgaagcgaacgctgacgtcacccagcacgtg
acagtcttcaacaataatccaaccggaaaatggacttggttgttacaaaatttggtcgag
tttttaagcgctggtagtctgctgatcttcgtaaccaaaaagctcaatgcggaagaactc
gcgaacaatcttaaattgaaagaattcgatgttttgctcttgcacggtgacatggaccaa
gtcgaaaggaacaaagtaataacggcattcaagaggaaggatgtcagtaccttggttgcc
accgacgtcgccgctcggggtttggacattccacatatcaaaactgtcgtcaattacgac
gtcgcgcgagatatagatacccacacacacaggataggtagaactggacgtgccggagag
aagggtaccgcgtataccctcgtgacggagaaagacaaagaatttgccgggcatctggtt
cgaaacttggaaggagcgaatcaggaggtaccaaagagtttgctagatttggcgatgcaa
agttcctggttccgaaaatcgagattcaaaggaggaaaagggaaaagtttaaacgtcgga
ggggctgggcttggttttaggggacggccggaagtctcttcgacctcgagtggcagtact
tcgtcacaggggtcgaaagacataagcgaagtcgtgaagaaattggagagacacgggcca
ggcagcgatcggttgtccgcgatgaaagccgcgttccgtagtcagtataattctcagttc
cgggcatcgtcggatcatacgtgggaacaaactattacgcctccttctgtgataatgcct
ccacctccccccatgccgcctaaaccaaatacggagccaccgcggaatcaggataaccaa
gcctcaaacatcgcaagggaaaagaaaagagtgagaaagagtcgatgggaataa
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