Colletes gigas: 122401928
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Entry
122401928 CDS
T07492
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cgig
Colletes gigas
Pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122401928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122401928
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122401928
Spliceosome [BR:
cgig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122401928
Complex C
U5 SnRNP specific factors
122401928
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
HTH_61
nSTAND3
PhoH
Motif
Other DBs
NCBI-GeneID:
122401928
NCBI-ProteinID:
XP_043260296
LinkDB
All DBs
Position
Unknown
AA seq
2134 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDRLKEKDKKKETELLLGSLAEERFALLVNLGKKIT
DFGSDEKNPTNEENIDETYGINVQFEESSEEDDEDVYGEIRENDDEADEGEEANDDRAIH
AENLGGAEEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLAVLKDAGDDRDC
ENQLVLLLGYDCFDFIKQLKKYRHTIAYCTMLASSQSESERQKIRNRMNDDPVLAKILRQ
LDTGKGDDDTDETMEARAQRKRREENEDTGGPGGQVQGTRNLIDLDDLMFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFTESEKLHPIDQLPKYVQPAFEGFKTLNRIQS
RLYQTALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINTDEFKIIYVAPMRS
LVQEMVGNFGKRLSTYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLIGLSATLPNYQDVAAFLR
IKPETGLFYFDNSFRPVALEQQYIGITEKKALKRFQVMNEIVYEKTMEHAGRNQVLIFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWIELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEIV
LGTIQNIRDAVTWLGYTYLYIRMLRCPNLYGISHDKLKDDPLLELHRADIIHSAAVGLDR
SGLIKYDRKSGNFQATELGRIASHYYCTHDTMAIYNQLLKRTLSEIELFRVFSLSSEFKH
INVREEEKLELQKLMERVPIPVKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFVTQ
SASRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDLGPNEIGELIRVPKLGKTIHKYIHQFPKLELSTHIQPITRSTLRVELTITP
DFQWDEKVHGASEAFWILVEDVDSEVILHHEYFLLKAKYAADEHLIKFFVPVFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPVTALRNSKFENIYTDKFP
QFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTTIAEFAVLRLLSQNPEGRCVYMVSKEALA
ELVYTDWSIKFNQQLGRKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQ
NIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIIALSASLADAKDAAQWLGA
PAAATFNFHPSVRPVPLELHVQGINITHNASRLAAMAKPVYNAILRYASHKPVIVFVPTR
RQARLTAIDLLTFTAAEGQPSRFFHAEEVDIKPFLDRMTDKTLKETLSQGAAYLHEGLSA
DDRRLVEQLFDSGAIQIAVVTRDLCWDLSISSHLVVVMDTQCYNGKTHTYEDYPITDVLQ
MVARANRPLEDDDAKCILLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIE
NKQDAVDYLTWTFLYRRLTENPNYYGLQGVTHRHLSDHLSELVESTLSDLEQAKCVAVED
EMDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYETVPVRQREEN
LLRSLAARLPHAPQATRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLSKAVRLIQAC
VDVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTSETIKRCTDKGVETVFDVM
ELEDDDRNRLLQLSEIQMADVAKFCNRYPNIEMSYEVQEKDKLRSGGTVNVIVQLEREDE
VTGPVVAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPAPGQHSYTL
YFMSDAYLGCDQEYKFTINVGEYDSDASSGSESD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctgcggccagacaattgcaatatgaatataaagccaattccaatcttgtt
ttacaagctgatgtgagattaatagaaaggcgtagcagagatgaagctaccggtgaggta
atgtcacttgttggaaaactcgatggtacacgtatgggtgacagagcacaacgtactaaa
ccaggaaaagcggaagaacgaaaagtcaaacgtcaaaagcgagacgaagcacagtatgat
ttcacgcgaatgaaaggtgcaacattactctcagaaggcgtggacgaaatggttggaatt
gtttatcgtcctaaaacacaagaaacgcggcagacttacgaagtgttgttaagttttatt
caagaagctttgggagatcaacccagagatatactttgcggcgctgccgatgaagtacta
gcagtcttgaaaaatgatagacttaaagaaaaggataagaagaaggaaaccgaactgctg
ttgggttctttggcggaagaaagattcgcgttgttggtcaatcttgggaagaaaataaca
gactttggtagcgacgaaaagaatcccacgaatgaggaaaatattgacgaaacgtatgga
attaatgtacagttcgaagaaagcagcgaagaggacgacgaagacgtttatggcgagatt
agagaaaacgacgacgaagccgacgaaggcgaagaagccaacgacgatagagctattcat
gctgaaaatctgggcggtgcggaagaaatgaaaaaagagaagccattgcatcctttggat
atagatgcgtattggttacaaagaagattaagcaggatctatgacgatgcaatggtttcg
caagcacgtgccgcggaagtgctagcagttttaaaggatgctggggatgatcgagactgt
gagaatcaattggtacttttgctaggctacgattgcttcgacttcatcaaacagctgaag
aagtacaggcatacaattgcttattgcactatgttggcatcttcacagtctgaatcggaa
cgacagaaaattcgaaatagaatgaacgatgatcccgtattagcaaaaattctgcgtcag
ttggatacaggtaagggtgacgacgataccgatgaaacgatggaagcaagagcgcaacgt
aaaagaagagaagagaatgaagataccggagggcctggtggccaagtccagggtacaagg
aatctaatagatttagatgatcttatgtttgcacaaggcagtcactttatggcaaataaa
cgttgccagttacccgatggtagtttcagaaaacaacggaaaggttacgaagaggttcac
gttcctgcattgaaaccgaaaccgtttacagaaagtgagaaactacatcctatcgatcag
ttgccaaaatacgtgcaaccggctttcgaggggttcaaaacgttaaatcggattcagagc
cgtttatatcaaaccgcgttggagagcgacgaaaatttactgctatgcgcgcccacgggc
gccggtaaaaccaacgttgcgcttttatgcatgatgcgtgaaattggtaagcatataaac
gccgatggtacgatcaacaccgacgagttcaaaataatttacgtcgcgccgatgcgctcg
ttggtgcaagaaatggtcgggaacttcggtaagagattgtccacgtacaacctgaccgta
tcggaattgaccggtgatcatcagctgacgagggaacagatcgccgcgacccaagtcata
gtgtgcacccccgagaagtgggacatcataacgcgtaaagggggcgagaaaacctttacc
tcgttggtcagattgatcataatcgacgaaattcatttgctgcacgacgagaggggaccc
gtgttggaagcactggtcgccagaacgatccggaacatcgaaacgacgcaggaggacgtg
aggctgatcggtctgtcggcgacgttaccgaactaccaagacgtcgcggcgtttttacgc
ataaagccggaaaccggactgttttacttcgacaacagtttcaggcccgtcgcgttggag
caacagtacataggcatcacggagaagaaagcgttgaaacgtttccaagtgatgaacgaa
atcgtctacgagaagacgatggaacacgcgggcagaaatcaagtccttatctttgtgcac
tcgcgaaaggagaccgggaaaaccgcgcgtgccatcagggacatgtgtttggagaaagac
acgctgggacagtttctcagagaaggatccgcgtccatggaagttttaagaacggaggct
gaacaggtcaagaatcaagaacttaaagatttgttgccttatgggtttgctatccatcac
gctgggatgacgagggtggatcgtacgttggtcgaggatcttttcgcggatagacacata
caggttttagtatcgaccgcgaccttagcgtggggtgttaatctacccgcgcacacggtt
attataaaaggtactcaggtgtacaatccggagaaaggtaggtggatcgagttaggcgcg
ctggacgtgttgcaaatgttgggcagagccggtcgaccgcagtacgacacgaaaggcgag
ggtatcctcatcacgaatcacagcgagttgcaatattatttgtctctgttgaatcagcag
ctacccatcgagtcgcaattgatcagtaaaatgtcggacatgctgaacgccgaaatcgtg
cttggcactatacaaaacatcagggacgccgtcacttggctggggtatacctacttgtac
atcaggatgcttcgttgcccgaatttgtacgggatcagtcacgacaagctaaaggacgat
ccgttgctcgagttacacagagcggatattattcattcggccgccgtaggattggatcga
agcggcctgatcaagtacgatcgaaagtcgggaaatttccaagctaccgaactgggacgg
atagcgtctcattattactgcacccacgacacgatggcgatctacaatcaattgctgaaa
cgtaccctgagcgagatcgaactgttccgcgtgttctcgctgtccagcgagttcaagcac
ataaacgtcagggaagaagagaaattggaattgcagaaattgatggagagggtgcccatc
ccggtgaaagaaagcatagaggaacctagcgcgaaagtcaatgtacttttgcaagcgtac
atctctcaattgaagctcgaaggtttcgctctcatgtccgacatggtgttcgttactcag
tccgcgtcccgattgatgagagcaatatttgaaatagtattgttccgcggttgggcgcag
ctggccgacaagtgtttatcgttgtgcaaaatgatcgatcgtagaatgtggcagtcgatg
tcgcctctgaggcagttcagaaagatgcccgaagagatcgtgaagaagatagaaaagaag
aacttcccgtgggagagactgtacgatctcggaccgaacgagattggtgagttgattcgg
gtgccgaaactcggtaaaacgatccacaaatatatacatcaattcccaaagctggaactg
tcgacgcatattcaaccgataacgcgttccactttaagggtcgagttaacaatcacgcct
gatttccagtgggacgagaaagtacacggtgcgtcggaagcattctggatcttggtcgaa
gacgtggactccgaagtgatacttcaccacgaatatttcctgttgaaagctaagtacgcg
gcggacgagcatttgataaaattcttcgtgccggtgttcgagccattgccgccccaatat
tttctacgggtcgtgtcggacaggtggatcggagcggagacccagttgcccgtcagcttt
cgccatttaattttaccagagaagaacctgccgcccaccgagctgctcgatttgcaaccg
cttccagtcaccgcgttgcgtaactccaagttcgagaacatctacacggacaagttcccg
cagttcaatccgattcaaacgcaggtgttcaacgctgtgtacaattcggacgataacgtt
ttcgtgggcgcgcccacgggctcggggaagaccaccatcgcggagttcgcggtgttgcgt
ttgctcagtcagaaccccgaaggcagatgcgtgtacatggtcagcaaagaggctttggcg
gaattagtgtacaccgactggtcgataaaattcaatcagcagttgggcagaaaggtggtt
ctgctgaccggggaaacgggaacagatcttaaattgctcgccaagggacagatcattatc
acaaccgcggacaaatgggacgtgttatctcgaagatggaagcaaagaaaaaatgtacaa
aacattcaactgttcatcgtcgacgagctccaattgatcggtggtgaagaagggcctgtg
ctggaggtagcgtgttcaagggcgcgttatatctcctcgcaactggacaaaccgaccagg
attatagcgttgtcagcttcactcgcggatgcaaaagatgcggctcaatggttgggcgcg
ccagccgctgcaaccttcaactttcatccgtcggtcaggcctgtgcctttggagttacac
gtgcaagggataaatattactcacaacgcgtccaggttggccgctatggcgaaaccggtg
tacaacgcgatacttcgttacgcctcccacaaaccagtaatcgttttcgtgcctactcgt
cgtcaagccagattaacggccatcgatttattgacgttcacggcggccgaggggcagccg
tctcgattcttccacgcggaagaagtcgacatcaaaccgttcttggacagaatgaccgac
aagacgttaaaggaaacgctctcccaaggagctgcttaccttcacgaaggattatccgcg
gatgatcggcgtctggtcgagcagctcttcgatagcggcgctatccaaatagcagtcgtc
acgcgtgacctatgttgggacttatccattagttctcaccttgtcgttgttatggacact
cagtgttacaacgggaaaacacacacatacgaggattatcctattaccgatgttctgcaa
atggtggcgcgtgcgaatcgtccattagaagacgacgatgctaaatgtatcctcctctgt
cagagctcgaagaaagacttcttcaagaaattcttgaacgaaccgttgcccgtggagagc
catctggaccacagattacacgatcacttcaatgctgaaatcgtgacaaagacgattgaa
aataaacaggacgctgtcgactatcttacctggactttcttgtacaggcggctcacggag
aatccaaattattacggattgcaaggcgttacgcatagacacttgtcggaccatttgtct
gaattggtcgaaagcacactgagcgatcttgagcaagcgaaatgcgtcgccgtcgaagac
gagatggacaccttgcctttgaatcttggaatgatcgctgcttattattacattaattac
gcgacgatcgaattgttcagcctttctttgaataataaaactaagatcagaggtttgctg
gagatcatttcagcggctgctgaatacgagactgttcccgttcggcaaagggaagaaaat
ctcttgaggagtttggcggcccgccttccacacgctcctcaagctaccagaatggccgat
cctcacgtgaaggcgcagcttttgttgcaggcgcacttgtccaggatacaacttggtccg
gagctacaaaaagacacggagttagtgttgagcaaggctgtcaggctgatacaagcttgc
gtcgatgttcttagctcgtccggttggctggcgcctgcggttgctgctatggaattggcg
caaatggtcacgcaagcgatgtggtcgaaagattcctatttgaaacagttgccacatttc
acgtccgaaactatcaaacgttgcacggacaaaggtgtggaaaccgtgttcgacgtaatg
gaactcgaggacgatgacagaaatcgccttctgcagctatctgaaatacaaatggcggat
gtcgctaagttctgtaatcgttatcctaatatagaaatgtcctacgaggtccaggagaag
gataaattgcgtagcggtggtacagtcaatgttatcgttcaactcgaaagagaagatgaa
gttactggaccagttgtggcgccattcttcccacaaaaacgcgaggaaggttggtgggtt
gttataggcgatccgaagaccaattctttgctgtctatcaagagattaacgctgcaacaa
aaggcgaaagttaaacttgattttgttgcgcccgcgcctggacaacattcctatactttg
tattttatgagtgatgcctatttgggatgcgatcaagaatataaatttaccataaatgta
ggagaatatgactcggatgccagttcaggatcagaatcagactga
DBGET
integrated database retrieval system
