Colletes gigas: 122403497
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Entry
122403497 CDS
T07492
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122403497
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122403497
Spliceosome [BR:
cgig03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122403497
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
nSTAND3
Ank_2
HA2_N
Ank
AAA_19
Ank_5
AAA_22
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
122403497
NCBI-ProteinID:
XP_043262982
LinkDB
All DBs
Position
Unknown
AA seq
1157 aa
AA seq
DB search
MPRHNRHKKAPFIGEDTRIAVNLTLKKLMDSPHQKELEFPSSYTSDERAYIHLLAYELGL
KSKSRGKGTNRFLTVYKREGSSIVQADALIKLPTSLRQSILSLIQSFPLSFKECHDLLPP
LERERHLNTDVSVNTNTKAMGRLNNSVPQIPQLKTNYDVLNFRKSLPIFNVRDEILNALN
ANQVVIIGGETGSGKTTQVPQFILEHCQQRLQPCRIICTQPRRLSAVSVAERVAFERDEK
IGQTFGYQIRLESRVAPKTLLTYCTNGVLLRTLMAGDSALSTVTHVIVDEIHERDRFCDF
LLIALKDALLKNRSLKLVLMSATLDVNIFVKYFNKCAVINVLGRSFDVDTYFLEEVLKIT
GYTTKEMLLKKKELLNKKDQRKILESWTQYKPQQSGSNSTTERCLLPAPILAQQSEPIPE
VVKLKPWLLEEMDLSIRKAWLCGGEDNFVQLLYFILSENVSVDYQHSATHVTPLMVAAGR
GCINTTEQLLNLGANLNLRAGNEWTALDWAKNMNQTECAELIEACMKIYDCALQDDAITY
AKDVPLSEEDKLLLDVYNHTFNDENINFDLLLRLIIHVHLKMPSGSLLIFLPGYDDIVTM
REKINNEAKEMNQGLRYTLYVLHSNMQTCDQKKVFKPSQQGTRKIILSTNIAETSITIDD
VVYVIDSGKVKEKSFDAISGVCTLKSKWISQACAKQRKGRAGRCRKGICYRMFSSIRYNS
MRPYQTPEILRLPLQELCLYTKHLAPGNTPIAEFLERALEPPSNIVTRNAVQLLKTIDAL
DPWEDLTELGSHLLDLPVEPRLGKMLLYAVVLKCLDPVLTIVCSLAYKDPFVLPSQPSQK
RAATAARKRFATNTYSDHMAVLRAFQGWQNARASGKERTFCEQNFISAAVMEMVVGMRTQ
LLGQLRASGFVRARGPGDIRDLNSNSENWAVVKAALTAGLYPNLIRVDREHLQLRTQKEV
KVFFHPSSTLRDYPKSPRMTSAQTHAANIETIPCDWLVYEEMSRTGRFCHVKMVTLVNPL
TVALFCGPARLSIDVISEAESVPESDSDSEVDETNEGTIFKLDDWIVFKLAPETSSYFVH
LRQKWNALFLRRMKTPNKAMSQLDEKVVSTVVSVITNEEQSCGLQQPSGIGQRPRPLIVD
YYPANTRRSDDFAERNF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccacgtcacaatcgtcacaagaaagcccctttcattggggaagatactagaattgct
gtaaatttaacattaaaaaagttaatggactctccgcatcaaaaagaattggagtttcca
tcgtcgtatacatcagatgagagagcatacattcatttacttgcgtacgaacttggatta
aaatccaaaagcagaggcaaaggtacaaatcgttttttaacggtgtacaagagagaggga
tcatccatagtccaagctgatgctctaataaaattgccaacgtcattgagacagagtatt
ttaagcttaatacaaagttttccattaagttttaaagaatgccatgatttattaccgccg
cttgaacgagaacgtcatcttaatacagatgtttcggtgaatacaaataccaaagcaatg
gggcgattaaacaacagtgtgccacaaataccacaattgaaaactaattacgatgtatta
aattttcgtaaatcgctaccaatttttaacgtcagagacgagattcttaatgctttaaat
gccaatcaagtggtcataataggtggtgaaacaggtagcggtaaaacgacccaggtgcct
cagtttattctggagcactgtcaacagaggcttcaaccttgtagaattatctgcactcaa
ccaagaagactgtccgccgtatctgtagctgaaagagtagcgtttgaaagagatgaaaaa
attggccaaacatttggttatcaaataagactcgagagcagagttgccccaaaaactctt
ttaacgtactgtacaaacggtgtattgcttagaactcttatggcgggtgattctgctttg
agtactgttacacacgttatagtagatgagattcatgaacgcgatagattctgcgatttt
cttttgatagcactgaaggatgcgttattgaaaaacagatctttgaagcttgtacttatg
agcgctacgttggatgtgaacatttttgtaaaatattttaacaaatgcgcggttatcaat
gtcttgggtagatcattcgacgtggatacatattttctagaagaagttctaaaaataact
ggttatacgacaaaagaaatgcttttaaagaaaaaagagttactgaataaaaaggatcaa
cgaaaaattttagaaagttggacgcaatacaagcctcaacaatcaggatcgaacagtacg
accgaaagatgtttattacctgctccgattttagcccagcaaagcgaacctattccagaa
gtagtgaaattgaaaccctggctattagaagaaatggatttaagtattcgcaaagcatgg
ttatgcggtggcgaagataatttcgtgcaacttctatatttcattctttctgagaatgtt
tctgtagactatcaacattccgcaacgcatgtaacgccgcttatggtggctgcgggtaga
ggatgcataaacactacggagcagctattgaatctgggcgccaatttaaatttacgcgca
ggcaacgagtggactgccttagattgggcgaaaaacatgaatcaaactgaatgtgcagaa
ttgatagaagcatgtatgaaaatttacgattgcgcattgcaagatgacgcgataacatat
gctaaagatgttccactttcggaagaggataagcttttattggatgtatataatcataca
ttcaacgacgagaacatcaatttcgatcttctgttacgattaattatacacgttcatttg
aaaatgccttccggttctcttttgatatttttaccaggatacgacgatatcgtgactatg
agggaaaaaattaataacgaagcaaaagaaatgaatcaaggtttacggtatactttatac
gtgctacattcgaacatgcaaacatgcgaccaaaagaaagtattcaaaccaagccagcag
ggaactcgtaaaattattctatcgacgaacatcgctgaaacgagtattacgatcgacgat
gttgtttacgttatcgattcgggaaaagtgaaagaaaagtctttcgacgctatatcggga
gtgtgcacgctcaaatccaagtggatttcccaagcttgtgcaaaacagcgtaagggcaga
gcaggaaggtgtagaaaaggcatttgctaccgcatgttctcttcgattcgatataacagt
atgcggccctatcaaactcccgaaattttaaggttaccactgcaagaattgtgtttgtac
acaaaacatttagctcccgggaacacaccgatcgcagaatttttagagcgagcactagag
cctccctccaatatagtaacaagaaatgcagttcagttgctaaaaactatcgatgcgtta
gacccgtgggaagatctcaccgaattaggaagtcatttacttgatttaccagttgaacca
cgactagggaaaatgttactgtatgctgttgttctgaaatgcttagatccagtcttgact
attgtgtgcagtttagcgtataaggacccctttgttttgccttcgcaaccatcacagaaa
cgagccgcaactgcagctcgtaagaggttcgcgaccaatacgtattccgatcatatggcg
gtgttgcgtgctttccaaggttggcaaaatgcacgtgcgagcggcaaagaacgtacattt
tgcgagcaaaattttatatctgctgctgtaatggagatggtagttggaatgcgtactcaa
cttctcggccagcttcgtgcatctggatttgttagggctagggggccgggagatatcaga
gatttaaattcaaattccgaaaattgggcagtggtaaaagcagctttgactgctggttta
tatccaaatctaataagagtggatagagaacacttgcaattgagaacacaaaaagaagtg
aaggtatttttccatccatcgtcaacattaagagattatccaaagtcaccacgaatgacg
tctgcacagacacacgcagccaatatagaaactataccttgcgattggttagtttatgaa
gaaatgagtcgtacaggacgtttttgtcatgttaaaatggttactttagttaatccacta
acagtagcgttgttctgtggtccagcaagactatctatagatgtaattagcgaagctgaa
tctgtaccggaaagtgattcagattccgaagtcgatgaaactaacgaagggacaattttc
aaacttgatgattggatagtatttaaacttgctcctgaaacttccagttactttgtacat
ttaagacagaaatggaatgccttattcttaaggcgtatgaaaacaccgaacaaagcaatg
tcgcagctagacgaaaaagtagtgagcactgtagtgagtgtaattacaaacgaggaacaa
tcatgtggattacagcaaccatctggtattggccaaagaccacgtccattaattgttgat
tattaccctgccaatactagaagatccgacgacttcgcagagagaaatttttaa
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