Colletes gigas: 122403808
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Entry
122403808 CDS
T07492
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cgig
Colletes gigas
Pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122403808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122403808
03009 Ribosome biogenesis [BR:
cgig03009
]
122403808
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122403808
Spliceosome [BR:
cgig03041
]
Complex A
U1 snRNP components
U1 related factors
122403808
Complex B
122403808
Ribosome biogenesis [BR:
cgig03009
]
Eukaryotic type
Pre-60S particles
Helicases
122403808
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
Ribosomal_S2
MEIOC
Motif
Other DBs
NCBI-GeneID:
122403808
NCBI-ProteinID:
XP_043263482
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MFNRDREHRGRRGGRGELHRFPTRGRGTPSNPRGGVKGKQPGGTLRKVNWDVRVLEPLRK
DFYVEHPAVRNRSKEEVSKFRENAEITVKGDDVPNPIQYFEEGNFPGYVLDEIRKQGYTQ
PTAIQAQGWPIALSGRDLVAIGQTGSGKTLGYILPAIVHIIHQPRLTNGDGPIALILAPT
RELAQQIQEVCNCFGETASVRNTCIFGGAPKGPQAHDLERGVEICIATPGRLIDFLERGT
TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRALAEDFLTD
YMHLNIGSLTLSANHNIIQIIDVCQEFEKDSKLYRLLQEIGNEKENKTIIFVETKRKVDD
ITRNIRRDGWQALSIHGDKNQQERDHVLQEFKSGRAPILVATDVAARGLDVDDVKYVINF
DYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMKHAGDLIEVLKEAGQNINPRLTEMAE
LAKAGNFGTRSGKRFVGSDRNIGRRGSSRGRGRGTYQSTANNYSGSDYGSYGNTKQINQN
AGYGYTTQRSYAQNSVTQSYAGGDNYANAYQYRGITY
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcgcgatagggagcacaggggtcgccgtggtgggcgaggcgagctccataga
tttcctacacgtggtcgagggactcccagtaaccctcgtggtggtgtcaagggcaaacag
cctggtggaacgctaaggaaagtaaattgggatgtgcgggtcttagaacctcttcgcaaa
gacttctatgtggagcatccagcagtccgcaacaggtccaaggaggaggtaagcaagttc
cgggagaatgcagagataactgtgaaaggtgatgatgtcccaaacccaatccaatacttt
gaggaaggaaatttccctggatacgtgcttgatgagatccggaaacaaggttacactcaa
ccaacagcaatccaggctcaaggatggcccatagccctcagtggcagggacttagtggca
attggacaaactggatctggtaaaacccttggatatattttgcctgcaatcgttcacatt
atccatcaaccacgccttacaaatggtgatggaccaattgcattgatcctcgctccaaca
agagagttagcacaacagattcaggaagtttgcaattgttttggagaaacagcttcagtg
aggaatacttgtatctttggtggagctccgaagggcccacaagcccatgatttggagcgt
ggcgtggaaatctgcattgctacacctgggagactcattgactttctcgaaaggggaact
acgaatctacgcaggtgtacgtacctggttctggatgaggcagacaggatgttggacatg
ggtttcgagcctcaaattagaaaaataattgaacaaattcgaccggacaggcaggtactg
atgtggtctgctacatggcccaaagaggttcgagcgctagctgaggactttttgacagac
tatatgcacctaaacattggttccctaactctgtctgccaatcataatatcatccaaatc
atagacgtttgccaggagttcgagaaggactcgaagctttatagattgttgcaggaaatt
ggaaacgagaaggaaaacaagaccatcatatttgtggagacaaagaggaaggtggatgat
atcactagaaatattagaagggatggttggcaggcactgagtatccatggagacaaaaac
cagcaagaaagagatcacgtgctgcaggagttcaagagcggaagagctccgatcttggtt
gcgactgacgttgctgccaggggattggatgtggatgatgtgaagtatgtgataaatttc
gactatccctcatcatcagaggactacattcacaggatcggtcgtacaggccgcagaaga
cagaccggaacagcatatgctttctttactagccacaatatgaaacacgcaggcgactta
attgaagttctaaaagaagctggccaaaatatcaatccacgacttacagaaatggcagaa
ttggccaaagcagggaactttggtaccagaagtgggaaacgttttgtcggaagcgataga
aacattggacgaagaggatcttcaagaggaagaggtcgtgggacttaccaatcgactgca
aataactattccggatcagattatggtagttacgggaatacgaagcagataaatcagaat
gcgggctacggatacaccacacagaggtcctatgcacagaatagcgtgacacaaagctac
gcagggggtgacaattatgccaatgcctatcaatatcgaggaataacttattga
DBGET
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