Colletes gigas: 122403847
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Entry
122403847 CDS
T07492
Name
(RefSeq) endoribonuclease Dcr-1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgig03036
]
122403847
Chromosome and associated proteins [BR:
cgig03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122403847
microRNA pathway
RISC loading complex
122403847
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
122403847
NCBI-ProteinID:
XP_043263545
LinkDB
All DBs
Position
Unknown
AA seq
1952 aa
AA seq
DB search
MAFPLNDQVYTKSFTPREYQVGLFYTAKEKNIIVCLGESYEQTFIVIQLIQEFATNNRRL
LSKGGKRSLYILTDVEKYKIKASYIEQLTDLKVLLCDTCPSTEFLDKFEVSHVLVTTSET
CAQLLAEKKILPHQINLVIVDECPKCIDDKLTFSLQNFLSCDSVPRIIGLGVPLFNLMQE
PGRLGLEIEKVETIFQCEVETASDILSILRYSPKPKEYVVEYSECEKGELHNTIENYTLH
AIEFLRDHRHDPTEIYSEEFYEDIQKIPDPTEKPFQMMQDFLLILDTLGPWCADRAALAL
LILTEKLKIKTPYERHYLLLNMVASVFMKIRALCDSTFEALSGKERIYKYTTPRVHRLLQ
VLKTYTPYYNKNGDIPHNKKNRQNNYKNSNNKENSHKRNFGQIKKSECNWRSNEENYTKV
TKSPKSLHHMREATDPDLLCGVIFVDKAFVAKVLFYLLNEISAYDEDLHFLSPLYAIEKN
ADDIGYSRALEMEHRKQEEVLKRFRIHECNLLISTSILEKGIDIPKCNFVMRYDFPKTYQ
SYVQCKSRARAVDALHVLLVSQKVSKECVWQLAQYHYVEKTLLVKCSNNEPTAKEENEAD
LYAAMIPQYKPLDGDDAPSVTFNSAISLVNRYCAKLPSDTFTRLTPEWSTVKTSLDNMPM
YICSLRLPINSPVKYIVSSYPMPNRAMARRMAALQLCVDLHRKNEIDDNLLPIGKENFKA
RPEDAEVPALPDESKVDFSEALLGTTKRRQYYYKKTAEALTDCRPKVGVPCYLYHIKMVL
SCPLPEEQNTRGRRIYPPEESAIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLSKQTVV
LNEVQIEKIATFLNYTFTNVLRLQQYLMLFDPNASENSYMIVPIKLDETSDVTVHWDFLE
YIYVNRNSVPTKVPEEVRRNFNFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSS
FPDNDYDTFEEYYLKKYDIQIQNVDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEET
KRAKRENLEHKQILVAELCAIHPFPASLWRLAVCLPCILYRINALLLANQIRCQVAQMIN
LGQENLDCNFEWPTLDFGWSLAEVLKKSKESEKSKSAKTETTQTSSLNAIDNKCQDIPEN
TDNLEKPSEENSSEQNHELQLEKVNATGIESQMSNNENELEIGTWSNDMAMNSMEFGTDD
LNVTVLSNDFNWNGVRYGSPACESDFDGYESDDIYSDGFADTSDESEDENRGLRISYIGE
NVAEAVEDEKQISKQEINKKILDLLETEKSTDDILWSYAKNNEESLIAKHRQSHYEFTKI
RESEIMENGSFISCNTEIVIKRKNSCNSQSEDNKLNYEHKAYVETVVDKFNKEILNTKSR
LQPIKKESNKSKLTYLDKNLFSFDYQPELKNHLGPSPSLILQALTMSNANDGINLERLET
IGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYRLGRQKMLGESMIATKFEPH
DNWLPPCYYVPKELEQVLIESGIPSTLWNQADIPTLQAVNPTEITQLVKETEQKLGIMKS
ELNRNETTLSNNLDNLCCFIPYNLITQHSIPDKSIADCVEALIGAYLIACGPRGALLFMA
WLGIHVLPTEEVCIIQETEPKERIPGSTPYIKGTNEQGQTTWTQIRYGTLEEPQNPLLRH
IPDPEHELKLMLDGYEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAV
LDYLITRHLYEDARQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSAVINR
FVRIQEENGHSISEEYYLIGEEECEDVEDVEVPKALGDVFESLAGAIYLDSCMSLDAVWS
VYYAIMKTEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFK
GIGRNCRIAKCTAAKCALKKLKRMQSYPREKL
NT seq
5859 nt
NT seq
+upstream
nt +downstream
nt
atggcatttccactaaatgatcaggtttatacaaaatctttcacacctagagaatatcaa
gttggattattttatacagctaaagagaaaaatataattgtttgtttaggagaaagttac
gaacaaacttttattgttatacaattaattcaagaatttgctaccaataataggagatta
ttaagcaaaggaggaaaacgatcgttatacatattgacagatgttgagaagtataaaata
aaagcaagttacatagaacaattaacagatttaaaagtgctattatgtgatacctgtcca
tcgacggagtttctagataaatttgaagtttcacacgtgttagttactacttccgaaaca
tgcgcgcagttgttagcagaaaaaaagattctaccgcatcaaataaatctagtcatagtc
gacgagtgccccaagtgtatagacgataagctaacatttagtttgcaaaactttttatct
tgtgacagtgttcctagaattattggattaggcgtaccgttatttaatttaatgcaagag
cctggaaggctaggcctagaaatagaaaaagtagaaaccatatttcagtgcgaagttgaa
acagctagcgacatattatctatattacgctatagccctaaacctaaagaatatgtagtg
gaatattctgaatgcgaaaaaggggaattacacaatactatcgagaattatacattacat
gctattgaatttttgcgcgatcatcggcatgacccaacagaaatttatagcgaagagttt
tacgaagacatccaaaaaataccagaccccacggagaaaccgtttcaaatgatgcaagat
tttttacttatactagacactcttggaccatggtgtgcagatcgtgctgcacttgcactt
ttaattttaacagaaaaattgaaaataaaaacaccttacgaaagacattatttattattg
aacatggtcgcgtctgtttttatgaagatacgagctttatgtgatagcacgttcgaagct
ttgtccggaaaagagagaatatataaatatactacgccaagggttcatcggctattacaa
gttttaaagacgtacactccatattataacaagaatggtgatattcctcataataaaaag
aaccgtcaaaataattataaaaattcaaataataaggaaaattctcataaacgtaatttt
gggcaaattaaaaaatcagagtgcaattggagaagtaacgaagaaaactatacgaaagta
accaaatctcccaaatctctacatcacatgcgtgaagctacggatcctgatctactttgc
ggggtgatttttgtggacaaggcatttgtagcaaaagttttgttctatttattaaatgaa
atatccgcatatgatgaagacttacatttcttatcgcctctttatgcaattgaaaaaaat
gcagatgatattggttactcgagggctttagaaatggagcatagaaaacaagaagaagtt
ttgaaaagatttagaatacacgaatgtaatttattaatctcaacttcaattttagaaaaa
ggcattgatatcccaaaatgcaattttgtaatgagatatgattttccaaaaacttatcag
tcttacgtacagtgtaagagtcgagcaagagctgtggatgcgttacacgtactattagtt
tcgcagaaagtatcgaaagaatgcgtgtggcaattagcacagtatcattacgtagaaaag
actttgttagtaaagtgttctaataacgaaccaactgcaaaagaagagaacgaggcagat
ttgtacgctgctatgataccgcaatataagccactcgatggagatgatgcaccttcggtt
actttcaattctgccatatcattggtaaacagatattgtgcaaaattacctagtgacact
tttacaagattaacgccagaatggtctactgtaaaaaccagtctagacaacatgcctatg
tatatatgttctttacggctccctataaattctccagtaaaatacattgtatcgtcatat
cctatgccaaacagagcaatggcaaggcggatggctgctctgcagttgtgcgttgatttg
catagaaagaatgaaattgatgataatttattgcctatcgggaaggaaaattttaaagct
agaccggaagatgcagaagtaccggctttaccggatgaaagtaaagtggatttttctgaa
gctctgcttggaacaactaaacgtagacaatattattataagaagacggctgaggcattg
acggactgtaggccaaaagttggagttccttgttacttgtaccacattaagatggtcctg
agttgtcctttacccgaagaacagaataccagaggtcgacgtatttatcctcctgaagaa
tcggctattggtttcggtataataacattgaaagaaattccaaagttatgtccttttcct
atttataccagatctggagaagttcatgtaaaattaaaactcagtaagcagactgtggtt
ttaaatgaagtacagatagagaaaattgccactttcctcaattatacttttacaaatgta
ttaagattacaacagtacctaatgctttttgatcctaacgcttcagaaaattcatacatg
attgtgcctataaaattagatgaaacatccgatgttactgtacattgggattttttagaa
tatatatacgtaaatcgaaattcagtgccaaccaaggttcctgaagaagtcaggcggaat
tttaattttgatgcatcgaaataccacgacgcagtgattatgccttggtatagaagtcaa
gaccaaccgcagtatttctacgttgctgaaatttgtacaaacttaaatcccaagtcttct
ttccctgacaatgattatgatactttcgaggaatattatcttaagaagtatgacatacaa
atacaaaatgtagatcagcctttgcttgacgtagatcatacctcggctaggttaaatttc
ttaacacctagatatgttaatcgaaaaggcgttgctttacctacaagcagcgaagaaaca
aaacgtgcaaaacgagagaatttggaacacaaacagatccttgttgctgaactatgtgca
attcatccattcccagcatccttatggagactagcagtttgtttgccctgtattttgtat
agaatcaatgccttattacttgctaatcaaatacggtgtcaagttgcgcaaatgatcaat
ttaggacaggaaaatttagattgtaatttcgagtggccgacgttggactttggatggagt
ttagcagaggttttaaaaaagtctaaagaaagcgaaaaatctaaatctgctaaaactgaa
acaactcaaacaagttctttgaacgcgattgacaataaatgtcaagatatacctgaaaat
acagataatttagaaaagcctagcgaagaaaattcaagtgagcaaaatcatgaattacaa
ttggaaaaagttaatgcaacgggaattgaatcgcaaatgtcaaacaatgaaaatgaatta
gaaattggtacttggtcaaatgatatggcaatgaattccatggaatttggtacagatgat
ttaaacgtgactgttttatcgaatgattttaactggaatggtgtacgatatggttctcct
gcatgcgagtcagattttgatgggtatgaatcggatgatatttacagtgatgggtttgct
gacacatcggatgaaagtgaagatgaaaatagagggttacgaatttcttatataggagaa
aatgttgcggaggctgttgaagatgaaaagcaaatatctaaacaagaaattaataaaaaa
atcttggatcttttagaaactgaaaaaagtacggatgacattttatggtcctacgcaaaa
aataacgaggaatctttaattgcaaagcatagacaatctcattatgaatttactaaaata
agggaatctgaaataatggaaaatggctcttttatatcctgtaataccgagattgtaatt
aaaagaaagaattcatgtaattcgcaatctgaagataacaagctgaattacgaacataaa
gcttacgtagaaacagttgttgataaatttaataaagaaatattaaatactaagagccgt
ttacaaccgataaaaaaagaatctaacaagtcgaaattgacatatctggacaagaatctt
ttcagtttcgattatcaaccagaattaaaaaatcatttaggaccgagtcccagcttaatt
ttacaagctttaactatgtccaatgcaaatgatggtattaatttagaacgtttagaaact
atcggggattcttttctaaaatatgctataactacttatttatattgtacatacgacaat
attcacgaaggcaaacttagtcacttaagatctaaacaggtcagcaatttaaatttatac
agattaggaagacaaaaaatgttaggtgagagcatgatagcgacaaaatttgaaccacac
gataattggttaccaccttgttactatgttccaaaagaactcgaacaagtattaattgaa
tctggcataccctctacgctttggaaccaagccgacattccgacattgcaagccgtaaat
cctactgaaataacccagcttgttaaagaaacagaacaaaaattaggcatcatgaagagc
gaacttaaccgtaatgaaactacactttcaaataatttagacaacttatgttgtttcata
ccttacaatttaattactcaacatagcattcctgataaaagtatcgcagattgtgtggag
gcattaatcggagcatacttaattgcttgtggccctagaggtgcattactttttatggcc
tggttagggatacacgttttgcccacagaagaagtttgtattatacaggaaacagaacct
aaagaaagaattcctggtagtacgccgtacataaaaggaacaaacgagcagggtcagaca
acatggacgcagattcgttatggtacgttggaagaaccacagaatcctctgcttcgacac
attcctgacccggaacacgaattgaaattgatgcttgatggatacgaggaattagaaaaa
aatatagggtataaatttcatgacattagttacttattacaagcatttactcatgcttcg
tatcaacctaatagattgacagattgttatcaacgtttagaatttcttggagatgcagtt
ttagattatttaataacaagacatttatatgaagatgcccgacaacattcaccaggtgct
ttgacagatttgcgatcagctttagtcaataatactatattcgcttccttggctgttaga
tgtggatttcataaatattttcgacatctttctcctggcttaagtgctgttataaatcgt
ttcgttaggattcaagaagaaaatggacattccattagcgaagagtactatttaattgga
gaggaagaatgtgaagacgttgaagacgtagaagtaccaaaagcattaggtgatgttttt
gaatcgttagctggtgcaatttatttggacagttgcatgtccctagatgcagtatggagc
gtttattacgccatcatgaaaacggaaattgaacaattcagcactaacgttcctaaatct
ccaattcgtgaattattggaattggaaccggaaacagcgaaatttggaaaaccagagaaa
ttggcggatgggcgtagagttagagttacggttgatgtttttggtaaggggtcgtttaaa
ggaattggaagaaattgtagaattgcaaaatgtaccgcggcaaagtgtgctcttaaaaag
ctgaaaagaatgcaaagttatccacgggagaaactatga
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integrated database retrieval system
