Colletes gigas: 122404033
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Entry
122404033 CDS
T07492
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgig01009
]
122404033
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122404033
04131 Membrane trafficking [BR:
cgig04131
]
122404033
03036 Chromosome and associated proteins [BR:
cgig03036
]
122404033
Enzymes [BR:
cgig01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122404033
Protein phosphatases and associated proteins [BR:
cgig01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122404033
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
122404033
Membrane trafficking [BR:
cgig04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122404033
Chromosome and associated proteins [BR:
cgig03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
122404033
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
122404033
NCBI-ProteinID:
XP_043263819
LinkDB
All DBs
Position
Unknown
AA seq
1168 aa
AA seq
DB search
MSDSVISGNLFAAAKQLADSEVQLIKAIENSKGKDNNSIIGNMSMSVKKSAKKSAKNSSI
RPSAALIAAKREATQQHISQRIKCSSIFVHDIYQKAIDANNLKRKKTGLVYDLSMSEHEC
LWDPNYPECPARLTNVLRRCEELGLISRCKFIAPRHATENEILTMHSQKQIDILKATDGC
TDADKLRSLSSKYDAIYVHPSTYKLSLLAVGSTINLVKSICKGEVQNGMAIIRPPGHHAM
KVEYCGYCFFNNVAIAAENVLSNNLANKILIVDWDVHHGQATQQMFYNDPRVIYFSIHRY
ENGEFWPNLRESNFHFVGDDLGQGYNFNVPLNKIGMTNADYLAIFQQVLLPMAYEFQPDL
VIVSAGYDAALGCPEGEMLVSPACYAHLLSSLLSLASGKVAVVLEGGYCLKSLAEGAALT
LRTLLGDPCPMLQNLELPSLSIRDSILNTIYSHKLYWKCYQYQDTYSINTTTHNKEQSIN
EHLPTVVFKGNDIRPEVYETGNCYPVQSKEVIELIEKQLNMLIQFTNLSMSSNKVCVVYD
DRMLSHCDLVDDSHPEKPNRISGIYKKYEEYNLLDRCCVQQGRSATMEELLLAHSKDYID
KIKTTDGLKYKELQKLATTFNSVYLHPETWTSACVSTGSLLQIVDSVLNGESQSGVAIVR
PPGHHAEEDAPCGFCIFNNIAVAARYAIEFHQLKRVLIVDWDVHHGNGTQSIFEEDQKIL
YMSVHRFDNGNFFPNSKRANYTFVGSGPGEGFNVNIPWNKKGMGDAEYIAAFQQAIMPIA
YMFNPELILVSAGFDACIGDPLGGCRVTPEMYGHLTHWLSSLANGRIILSLEGGYNINSI
SHAMTICTKTLLGDPLPMLESNQTPCASAVNSINNVLKTQKQYWPNLTFNVSLPKENVLP
KAKVLHVKTNEETRNVEEHSKQSESKIALEEIESEKLELKISINKTCLNSVTDEEISKLQ
NEVENIKIKNSSYDDTSKAIEEARNKLLNMQVSEYGKKNVNQPGKEASSEKNVNNSNPGG
SSGRNERSAAEGSVATNLYDYLSQNLQALVVGEMFAIVPLRECPHLDSVSDVPGSGINVH
LPCLECESNVENWICLQCYTVHCARSINQHGVLHVERTEHPLALSFTDLSVWCYSCEAYI
DNPRLYAARNAAHQSKFNEELPWTYNEN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattctgtgataagtggaaatctgttcgctgctgctaaacaattagcagatagc
gaagtccagctcataaaagctatagaaaattcaaaaggaaaagacaacaacagtattatt
ggaaacatgtctatgtcggtgaaaaaaagtgccaaaaaatctgcgaaaaattctagcatt
cggccatccgctgctttaatagctgctaaacgagaggcaacgcaacaacatatatcgcaa
aggataaagtgtagctctatctttgtacatgatatatatcaaaaagccatagatgccaac
aatttaaagaggaagaaaactggtcttgtatacgatctgtccatgtcggaacacgaatgt
ctttgggatccaaattatccagaatgtcctgccagattgacgaatgttctacgaagatgc
gaagaattaggtttaataagtaggtgcaaattcattgcacctaggcatgctacggagaat
gaaatactcacgatgcacagccaaaaacaaatcgatattttaaaggccacagatggctgt
acagatgcagataaattacggtctctctcgtctaaatacgatgcaatttatgtacaccct
tctacctacaaattgtccctgttagccgtgggctcgacgatcaacttggtgaaaagtatt
tgtaaaggtgaggtacaaaacggaatggctattataagaccacctggacatcacgcaatg
aaagtagaatattgtggatattgttttttcaataatgttgcgatcgctgctgaaaatgtt
ttgagtaataatttggctaataaaattttgatcgtcgactgggatgtacatcacggacaa
gcaacccaacaaatgttttataatgatccacgggtaatctacttttctattcatcgttac
gagaatggtgaattttggccaaatcttcgagaatctaattttcattttgtcggagatgat
ttaggacaaggatataacttcaatgtgcctcttaacaaaattggtatgacaaatgctgat
tatttagccatatttcagcaagttttattaccaatggcttacgagtttcaaccagatctg
gtaatagtgtcagctggttatgatgcagccttgggctgtccagagggcgagatgttggtg
agccctgcatgttatgctcatctattatcatctttactgagtttggcatctggaaaagtt
gctgttgtactagagggtggctattgtttgaaatcattagctgaaggtgcagcattgacg
ctacgcacattgttaggcgatccgtgtcccatgttacaaaatcttgaattaccttcgtta
agtatacgcgactcaattttaaatacgatttacagtcataaattatattggaaatgttac
caatatcaggatacgtacagtattaatactaccacgcataataaggagcaaagtattaat
gaacatttacctacagttgtatttaaaggaaacgatattaggccagaagtgtacgaaact
ggtaattgctatccagttcaaagtaaagaagttatcgagttgatagaaaagcagttaaat
atgttaatccaatttaccaatttgtccatgtcatcgaacaaagtgtgcgtagtttatgat
gatagaatgttaagtcattgtgatttagttgacgatagtcatccggagaaaccaaatcgt
attagtggtatttacaaaaagtacgaagaatataatttacttgatcgatgttgtgtacaa
cagggacgaagtgcaacgatggaagaattattactggctcattcgaaagattacatagat
aagataaagaccaccgatggtttaaaatacaaggagttgcagaagctggccacaactttt
aactctgtttatttacatcctgaaacttggacaagtgcctgtgtatctaccggatcttta
ttacaaatagtcgatagcgtattaaatggagaaagccaatctggtgtagctattgtcaga
cctccagggcatcatgcagaagaagatgcaccgtgcggtttctgtatttttaataatatt
gctgtagcagctagatatgccatagaatttcatcagttgaaaagggttttaatagtggac
tgggacgtgcaccacggcaatggaacgcaatcgatcttcgaagaagatcaaaaaattcta
tatatgtctgttcatcgttttgataatgggaatttcttcccaaattctaaacgtgctaat
tatacctttgtcggttccggcccgggagaaggttttaatgtcaatataccatggaacaaa
aaaggaatgggcgacgcagagtacatagcagcatttcaacaagcaataatgccaattgca
tatatgtttaatccagaactaattttagtctcggcgggtttcgacgcatgcattggcgat
ccacttggtggttgccgcgtaacaccagagatgtatggacatttaacacactggttatct
tctttggctaatggtcgtattatcctcagtctcgaagggggttacaatattaattcgatt
tcacatgcaatgaccatttgtacaaaaacgttacttggtgatcctttgccgatgttggaa
agcaatcagactccgtgcgcgagcgccgttaactctataaacaatgttttaaaaacgcag
aagcaatattggccgaatttaacatttaatgtgtctctgccgaaagagaatgtactcccc
aaggctaaagtgttacacgtaaaaacaaatgaagaaacgagaaacgttgaagaacattcc
aagcagtccgagtctaagatagcgttggaagaaattgaaagtgagaagttggagttgaaa
atttcgattaataaaacatgtctaaattctgtgacggacgaagaaatttcaaagttacaa
aacgaggtggagaatataaaaataaagaactcatcgtacgacgacacttcaaaggcgatc
gaagaagctcgtaataaattattaaacatgcaagtttccgaatatggaaagaaaaacgta
aatcagccgggaaaggaagcgtcttctgagaaaaatgttaataactcaaaccctggtggc
agcagtggtcggaatgaaagatcggctgctgaaggaagtgttgctacaaacttgtacgat
tacctgtctcaaaatttgcaggcgttggtagttggagaaatgtttgcaatagtaccttta
cgagaatgtccacacctggatagtgtcagcgatgtaccgggatcgggaatcaatgtacat
ttgccatgtctggaatgcgaaagcaatgttgaaaattggatctgtttacaatgttacact
gtacactgtgcgcgcagcattaatcaacacggcgtgttgcacgtagaaagaacggaacat
cctttggctctgagttttaccgatttatcggtttggtgctacagttgtgaggcgtacata
gataatccgcgactatacgctgctcgtaatgccgcacatcaaagtaaatttaacgaagaa
ttaccatggacatataacgagaattga
DBGET
integrated database retrieval system
