Colletes gigas: 122404627
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Entry
122404627 CDS
T07492
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgig04147
]
122404627
00535 Proteoglycans [BR:
cgig00535
]
122404627
00536 Glycosaminoglycan binding proteins [BR:
cgig00536
]
122404627
Exosome [BR:
cgig04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122404627
Proteoglycans [BR:
cgig00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122404627
Glycosaminoglycan binding proteins [BR:
cgig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122404627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
122404627
NCBI-ProteinID:
XP_043264698
LinkDB
All DBs
Position
Unknown
AA seq
1133 aa
AA seq
DB search
MRPKLQLVIFAAFCATYANADFFGEKKELVYDLLQASVASTDDNNLYIDDALDGFPAFGF
RPGSEVKQPYRLYLPEKLPAEFTLVATLKPMSFRTSYLFAVLNPFETVVQLGIRISDGPG
TNQNVSLIYTNSDQNSHSEEVAKFTVPKLTKKWSKIVIRVSLTEVTLYLNCHEMAKQRVT
RMPPELVFDTASTLYIAQAGPHIQEKYDGLLQTLKLYSGHPADLVKCTADFNFDAEEDLG
SGDLDPELIDGSGNIDINKIDIGRDDDEDRSEESNPPPFITPPPPNPDYKGPKGDKGDKG
DKGESVRGPPGPPGPPGQDEGPQGEKGEPGTCACNATALMASFTMPKMIQGPKGEQGVPG
QEGKQGQMGLTGAAGPPGERGLEGPHGAKGDKGDVGVQGPEGPQGQKGEPGRDGIPGEKG
AQGPPGPPGKDEYSSYNLSWGRRGAYRMDEITMRPGLPGQKGEAGIPGNPGQKGESGIVG
AKGNRGESGHKGVKGDHGKEGPRGIQGFKGEPGAPGTPGLPGAPGENGRPAEKGDKGDTG
PEGKLGPPGPPGPPGVSGVTGPGAINVGESVLGEKGDRGEMGPRGHKGDKGTKGEKGDKG
NSGPAGIPGVNGIQGPQGNKGEPGKDGDAGAPGVGGSKGDKGERGPPGATAIASSGDYIT
IKGEKGTAGKRGTKGHRGPPGPAGPPGKPGIMGEIGLPGWMGRPGNPGLPGPVGPGGPKG
EKGEPGTPGPYGVSVGALNNVQIKGDKGDEGFPGIPGQAGRDGQRGPPGPPGPPSQGNYI
PVPGPPGPPGPPGPPGMLGGQKEESGSSRSHIFGEKDYYGIRQGSATVATRGPLESTTKI
VPGAVTFQNTEAMTKMSAVSPVGTLAYIIDEQALLVRVNNGWQYIALGSLLSITTPAPPT
TSPPPANPPFEASNLINQIPVKADGTGWYPRMLRMAALNEPFTGDMHGVRGADYACYRQA
KRAGLRGTFRAFLSSRVQNVDSIVRLGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNP
RIYSFNGKNILSDFAWPEKVAWHGSHKLGDRAMDTYCDAWHSSNSDRYGLGSPLTGGRLL
EQVRYSCDNKFALLCIEVTSEITRRRRSVEVTEDAEEMSENDYKEYLDALMDN
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctaaattgcaattggtgatattcgccgcgttctgtgcaacgtacgccaacgcg
gatttcttcggcgagaagaaagaactggtctatgatttactgcaggcatccgtggcatcg
acagacgacaataatttgtacatcgacgatgctctcgatggatttccggctttcggtttc
cgacctggctccgaagttaaacaaccctatcgattatatctcccggaaaaattgccagcc
gagtttactctggtggcaactttgaagccaatgtccttcagaaccagttatctgtttgca
gttctcaatcccttcgaaactgttgtgcaattaggcattcgaatttcggacgggccggga
accaatcaaaacgtgtcgttgatttacacgaactccgatcagaattcgcattcggaggaa
gtagcgaaattcactgtgccgaagctaacaaagaaatggtcgaagatcgttatcagagtt
tctctcaccgaggtcactttataccttaattgccacgaaatggccaaacaaagagtgacc
agaatgcctccggaattagtgttcgataccgccagcacgctctacatcgctcaagctgga
ccgcatattcaagagaaatacgacggtctactgcaaacgttgaagctctattccggacat
ccggcggatttggtaaagtgcacagccgacttcaatttcgatgcggaggaggaccttggc
tcgggcgatcttgatcccgagctgatcgacggttcggggaatattgacattaataagata
gacatcggacgagacgatgacgaagacagaagcgaggaaagcaatccaccgccattcatc
acacctcctcctcccaatccggactacaaagggccgaaaggcgataaaggtgataaagga
gacaagggggaaagcgtcagaggacccccagggcctccaggtccaccaggacaggacgag
ggtccgcaaggggagaaaggagagcctggcacgtgcgcctgcaacgcaacagccctgatg
gcgtcctttacgatgccaaagatgatccagggaccgaaaggagaacaaggagtaccgggt
caagaggggaaacaagggcaaatggggctgacgggcgcagcaggaccgccgggagagaga
ggactcgaaggacctcatggtgctaaaggcgataaaggagacgtgggcgtgcagggaccg
gaaggtccccaaggacaaaaaggtgaaccgggtcgtgacggaataccgggggaaaaaggc
gcccaaggacctccaggaccgccgggaaaggacgaatactctagctacaatctcagttgg
ggacgccggggagcttacaggatggatgaaatcacgatgaggccagggctgccaggacag
aagggcgaggcaggcattccagggaatccaggacagaaaggggagtcgggaatcgtgggt
gccaaaggaaacaggggcgaatcgggacacaagggcgttaaaggcgatcacgggaaagaa
gggccgcgaggaattcagggattcaaaggtgaacccggggctcctggaacgccggggcta
cctggggctccgggtgagaacggaaggccggctgagaagggcgacaagggcgacacggga
ccggaagggaaactaggtcctccgggaccaccaggaccaccaggcgtgtccggcgtcact
ggacctggggcaataaacgttggggaatcagtattaggagagaaaggtgacaggggcgag
atgggtccgcgcgggcataaaggagataagggcaccaaaggggagaaaggagataaaggt
aactcaggaccagccgggattcccggtgtgaacggcattcaaggaccccaaggcaacaaa
ggagagccaggcaaagatggagacgccggcgcgccaggagtcggtggttcaaagggcgat
aaaggcgagagaggaccgccaggagccacggctatagcgagctccggtgactacattact
atcaagggtgagaagggcacggcgggcaagaggggtaccaaaggacatcgaggaccacct
ggtcccgctggaccacctggaaaaccgggaattatgggagaaattgggttacccggatgg
atgggccgccctggaaatcctggactacccggacctgttggaccaggaggacccaagggg
gaaaaaggtgaacccggaacaccgggtccttacggagtttccgttggtgccttgaacaat
gttcagataaaaggcgataaaggagacgaaggtttccctgggattcctggacaagctgga
agggacggccaaagaggacctccaggaccacctggaccaccgtctcaaggaaactatatt
ccagtcccaggccccccagggccccctggaccaccaggaccgccaggaatgctaggtgga
cagaaagaagagtcaggatcaagtagaagccatatatttggcgagaaggactattacgga
atcagacaaggttccgcgaccgtggcaacgagaggtcctttggagagcacgacgaagatc
gtacctggagcagtgactttccaaaacaccgaagccatgacaaaaatgtccgctgtaagt
ccggttggaacattggcgtacatcatagacgaacaggcgcttctcgttagagtgaacaat
ggctggcaatacattgcattgggatctcttttatcaataactactccagcaccgccgacc
acgtcgccacctccagcaaacccaccttttgaggcttccaacctgatcaaccagatacct
gtaaaagcagatggaacggggtggtatccacgaatgttacgaatggctgctctgaacgaa
ccgtttaccggagacatgcacggcgtacgaggagctgactatgcctgttatcgacaagca
aagcgagctggcttgaggggaacgttccgtgcattcctcagctccagggttcaaaacgtc
gacagcatcgtgagactcggggacagagacctccctatcgttaacataaagggagacgtc
ctcttcaactcttggaaggaaatgttcaacggaaacggagcgtacttctctcagaaccct
agaatttacagtttcaatgggaagaacatcctcagtgattttgcatggccagaaaaggtg
gcttggcacggctcgcacaaattaggagaccgcgcgatggacacgtactgcgacgcctgg
cattcgagcaattctgatcgttacggattaggatcgcccctaacggggggtcgtctcttg
gagcaagttcgttattcgtgcgacaacaagttcgctctgctctgcatagaagtgaccagc
gagattacaagaagaaggcggagcgtcgaagttacggaggacgcggaggaaatgtcggag
aacgattacaaggagtacttggacgctctgatggacaactaa
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integrated database retrieval system
