Colletes gigas: 122404935
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Entry
122404935 CDS
T07492
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cgig
Colletes gigas
Pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122404935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122404935
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122404935
Spliceosome [BR:
cgig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122404935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
AAA_30
SLFN-g3_helicase
Flavi_DEAD
T2SSE
Cas3-like_C_2
nSTAND_NTPase5
TsaE
Motif
Other DBs
NCBI-GeneID:
122404935
NCBI-ProteinID:
XP_043265273
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MSKYRRKESSSEDSDSEEERRKKDIKERDEFANRLKAKDESRIRKVAMPAGSGAAEAAKR
LKIMETDMREKLVPKLRVESRRKYLEKRKEDKVAELEADIIDDEYLFEDQILTDREKKER
EHKKQLLQLAKEHEKARELERVQRYHMPLEKGKVEPEQDVHDNEPLQSEQSKWESDQMSS
AVFRFGAKDRKVEQDYDLLLEDEVEFVQALRMPGSDKDRKREISPPPQVKALQTIQETKK
SLPIYPFRNDLIQAIKDHQVLIIEGETGSGKTTQIPQYLYETGFAEDNKIIGCTQPRRVA
AMSVAARVAHEMAVKLGNEVGYAIRFEDCTSHRTRIKYMTDGTLHREFLSEPDLASYSVM
IIDEAHERTLHTDILFGLVKDITRFRQDLKLLISSATLDATKFSEFFDDAPIFRIPGRRF
PVDIYYTKAPEADYIDASVVSILQIHATQPPGDILVFLTGQDEIETCQEMLQERVRRLGS
KLGELLILPVYANLPSDMQAKIFQPTPFGARKVVLATNIAETSLTIDNIVYVIDPGFAKQ
NNFNSRTGMESLMVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYQHELEDNTVPEIQR
INLGNAVLTLKALGINDLVHFDFLDPPPHETLVLALEQLYALGALNHRGELTKLGRRMAE
FPLDPMMAKMLLASEQYRCSEEVATIAAMLSVNGAIFYRPKDKIIHADTARKNFHVPGGD
HLTLLNVYNQWQQSDFSTHWCYENFIQHRSMKRARDVREQLIGLMQRVEMELVSGITETV
NIRKAITAGYFYHVARLSKGGHYKTAKHNQTVSIHPNSSLFQELPRWLLYHELVFTTKEF
MRQVTEIESKWLLEVAPHYYKPKELEDSTNKKMPKVAGRSRPDGTN
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagtacagaagaaaagaatcctcgagcgaggatagtgacagtgaagaagagagg
cgtaagaaggatattaaggaaagagatgaattcgctaatcgtcttaaagcgaaagatgag
agtagaatacggaaggttgctatgccagctggctcgggagcagctgaagcagcaaaacga
ctcaaaattatggaaacggacatgagggagaagttggtaccaaagctgagagttgaatct
cgtagaaaatatttggaaaaacgtaaagaagacaaagtggcagaattggaagccgatatt
atcgatgatgaatatctgtttgaagaccaaatattgacagatcgggaaaagaaagaaagg
gaacacaagaagcagttattacagttagcaaaagaacatgaaaaagctagggaactcgaa
agagtacaaaggtatcatatgcccttggaaaaagggaaggttgaaccggaacaagatgta
catgacaacgagccactgcaatctgaacaaagtaaatgggagtccgatcaaatgtcgtcc
gccgtcttccgctttggcgccaaagacagaaaagttgaacaagattacgatctccttttg
gaggacgaggtagaatttgttcaagcgctgcgtatgcctggcagtgataaagaccggaaa
cgtgaaataagtccaccaccgcaagtgaaagcactgcaaaccatacaggaaacgaaaaag
agtttacctatctaccccttcagaaacgacttgattcaagcgatcaaagatcaccaggtg
ttgataatagagggagaaacgggctccggaaaaacgacgcagatcccacaatatttatac
gagaccgggttcgcggaagataataaaattatcggctgtactcagccgaggagagtggct
gccatgtccgtggcagcgagagtcgctcacgaaatggctgtgaaattgggaaacgaagtc
ggttacgcgatccgtttcgaggattgcacttcccatcgaactcgaattaaatacatgact
gacggtacgctgcatcgagaatttctaagcgaaccggacttggcttcctacagtgtcatg
atcatcgacgaagctcacgaacgtactttgcacactgatatattattcgggttggtgaag
gatatcacaagatttcgacaggatttgaagttgttaatttcgtcggccactttggacgca
acgaaatttagcgagttcttcgacgacgctcccattttccgaatacccggtcgacggttt
cccgtcgatatttattacaccaaagcccccgaggcagattacatagatgcttccgtcgtt
tccattcttcagatacacgcgactcaaccccctggcgatatactcgtatttttaacaggt
caggacgagatcgagacatgtcaggaaatgttgcaagaaagagtgaggcgattagggtcg
aaattaggggagctcttgattttacccgtttacgcgaatcttccaagcgatatgcaggcg
aaaatatttcaaccgacaccgttcggcgccagaaaggtagttctcgccaccaatatagct
gaaacatccttaactatagacaacatagtgtacgtgatagatcctggattcgcaaaacag
aacaatttcaactcccggacaggcatggaaagtttgatggtggtgccaatcagtaaagcc
tccgccaatcaaagagctggaagagccggtagagtagccccgggcaagtgctttcgactg
tacacggcttgggcctatcaacacgagctagaagacaatacagtacctgaaattcagagg
attaatctgggcaatgctgtactcactttgaaggcgttaggtataaacgacttggtccat
ttcgatttcctcgatccaccaccccacgagacgttggtcctagcgttggaacagctgtac
gctttgggagctttgaatcatcgcggtgaactaacgaaactcggcagaagaatggccgag
ttcccgttggatccaatgatggccaagatgttgttggccagcgagcagtatcgttgctcg
gaggaggtggccaccatcgccgccatgttgtcggtgaacggggcgatcttttatagacca
aaggataagatcatacacgcggacacggcgcgtaaaaatttccacgtacccggcggagat
catctcactttgctgaacgtgtataatcagtggcagcaaagcgacttcagtacccattgg
tgttacgagaatttcattcagcatcggtcgatgaagcgggcgagggacgtcagggagcag
ttaatcggattgatgcagcgggtcgagatggagctcgtttcggggatcacggaaaccgtg
aacatcaggaaggctattacagccggttacttctaccacgtggctcgattgtcgaaaggg
ggccactacaagactgctaagcacaatcaaacggtgtcgattcatccgaatagttcactg
tttcaagaactaccgcgttggctactctatcacgaactagtattcactacgaaggagttc
atgcggcaggtaacagagatcgaaagcaaatggctattagaagtagctccgcattattac
aaaccaaaagaactggaggactccacgaataagaagatgccgaaagttgcgggaagatcg
cgcccggacggaacaaattaa
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integrated database retrieval system
