Castellaniella ginsengisoli: ABRZ00_05660
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Entry
ABRZ00_05660 CDS
T10938
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cgin Castellaniella ginsengisoli
Pathway
cgin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABRZ00_05660 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgin03021
]
ABRZ00_05660 (rpoA)
03400 DNA repair and recombination proteins [BR:
cgin03400
]
ABRZ00_05660 (rpoA)
Enzymes [BR:
cgin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABRZ00_05660 (rpoA)
Transcription machinery [BR:
cgin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABRZ00_05660 (rpoA)
DNA repair and recombination proteins [BR:
cgin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABRZ00_05660 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
XDJ56655
LinkDB
All DBs
Position
1201701..1202699
Genome browser
AA seq
332 aa
AA seq
DB search
MSAQGFLKPRTISVETLSAHHAKVVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQIS
GVVHEYSTITGVREDVVDILLNLKGVVFKLHNRDEVTLQLNKQGPGEVRARDIELPHDVE
IVNPDHLIATLTDNGRLEMQVKVEQGRGYVPGNVRALADDRSATIGQIVLDASFSPVRRV
SYAVENARVEQRTDLDKLVLDVETNGVISPEEAVRQSARILMDQISVFVSLADKDAGQLT
TSLPVGGQSAPIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGR
KSLNEIKEVLAARGLTLGMKLENWPPVGLERP
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcacaaggttttctgaagccccgtaccatttccgtcgagaccctgagcgcgcat
cacgccaaggtcgtgatggagcccttcgaacgcggctacggccacacgctgggcaacgcc
ctgcgccgtatcctgctgtcttccatgacgggctacgcccccactgaagtccagatcagc
ggcgtcgtgcatgaatactccacgatcaccggcgtgcgcgaggacgtggtcgacatcctc
ctgaatctcaagggtgtggtgttcaagctccacaaccgcgacgaagtcacgctgcagctc
aacaagcagggccccggcgaagtccgcgcccgcgacatcgagctgccccacgacgtcgag
atcgtcaatccggatcacctgatcgccaccctgacggacaacggccgcctggaaatgcag
gtcaaggtcgagcaaggccgcggctacgtgccgggcaatgtgcgcgccctggccgacgac
cgttcggccaccatcggccagatcgtgctggatgcctctttcagccctgtgcgccgcgtc
agctacgccgtcgagaacgcccgcgtcgagcagcgcaccgacctggacaagctggtgctg
gacgtggaaaccaatggcgtcatcagccccgaggaagccgtgcgccagtcggcccgcatc
ctgatggaccagatttccgtgttcgtgtcgctggccgacaaggacgccggccaactgacc
accagcctgccggtgggcggccagtcggcgccgatcgatccggtgctgctgcgtccggtc
gacgacctcgaactgacggtgcgttcggccaactgcctgaaggccgagaacatctactac
atcggcgacctgatccagcgcaccgagaacgagctgctcaagacgccgaacctggggcgc
aagtcgctcaacgagatcaaggaagtcctggccgcacgcggcctgaccctgggcatgaag
ctcgaaaactggccgcccgtcggcctcgagcgcccctga
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