Castellaniella ginsengisoli: ABRZ00_09070
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Entry
ABRZ00_09070 CDS
T10938
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cgin Castellaniella ginsengisoli
Pathway
cgin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABRZ00_09070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgin03019
]
ABRZ00_09070
Enzymes [BR:
cgin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABRZ00_09070
Messenger RNA biogenesis [BR:
cgin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABRZ00_09070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XDJ54717
UniProt:
A0AB39EI71
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All DBs
Position
1906335..1907714
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AA seq
459 aa
AA seq
DB search
MTDTLPQDTAIEAPVPFAQFGLHPGIMQAIEATGYVSATPIQAKAIPIAMAGRDVMGAAQ
TGTGKTAAFSLPILHRLMPFANSSASPARHPVRALILTPTRELADQVHANIAQYSSAVPL
RTAVVFGGVDIRPQRDLLRQGCEILIATPGRLLDHVEQRNVNLGQVGILVLDEADRMLDM
GFLPDLDRIMRLLPPGRQGLLFSATFSPEIRKLGRTFLRTPVEVEVARPNATADTVTQIA
YPLEGEAKRRAVVHLVKSRQLNQVIVFSNTKIGCSRLARQLEQDGVRAESIHGNKTQIER
MKALEAFKAGTLEVLVATDVAARGLDVAGVPCVINYDLPRNAEDYVHRIGRTGRAGASGE
AIALFAPEEERYLLDIEKLIKTRIPRGELELPRSMARRRPVGSGHHAAPGRHAPAAPQDD
FFSRPYEPAAAAPRVEAEARPAVVPARRPVGVLLGGKSS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccctcccccaagataccgctatcgaagcgcccgttccgttcgcccaattc
ggcctgcaccccggcatcatgcaggccatcgaggccaccggctatgtttccgccaccccg
atccaggccaaggccattcctatcgccatggccgggcgcgacgtcatgggtgcggcccag
acgggcacgggcaagaccgccgccttttccctgccgatcctgcaccggctgatgcccttc
gccaacagcagcgcctcgccggcgcggcaccccgtgcgcgccctgatcctgacgcccacg
cgcgaactcgccgaccaggtgcatgccaacatcgcccagtacagcagcgccgtgcccttg
cgcacggcggtggtgttcggcggggtggacatccgcccgcagcgcgatctgttgcgccag
ggctgcgaaatcctgatcgccacgccgggccgcctgctcgaccacgtcgaacagcgcaac
gtcaacctcggccaggtcggcatcctggtgctggacgaggccgaccgcatgctggacatg
ggcttcctgcccgacctggaccgcatcatgcggctgctgcctcccgggcggcagggtttg
ttgttttccgccacgttcagccccgaaatccgcaagctcggccgcacattcctgcgcacg
ccggtcgaggtcgaggtcgcgcgccccaacgccacggccgacaccgtcacccagatcgcc
tatcccctcgaaggcgaagccaagcgccgggccgtggtgcatctggtgaaatcccgccag
ctcaatcaggtcatcgtgttttccaacaccaagatcggctgcagccgcctggcccgccag
cttgagcaagacggcgtgcgagccgagtccatccacggcaacaagacacagatcgagcgc
atgaaggcactggaagccttcaaggccggtacgctcgaagtcctggtggcgaccgacgtg
gctgcccgaggcctggacgtcgccggcgtgccctgcgtcatcaactacgacttgccgcgc
aatgccgaggactacgtccaccggattggccgcaccggccgggcgggagcctcgggcgaa
gccattgcgctgtttgcgcccgaagaagagcgctatctgctggatatcgaaaaactcatc
aagacccggattccgcgcggcgaacttgagctgccgcgcagcatggcgcgccgtcgtccc
gtcggcagcggccatcatgccgcgcccgggcggcatgccccggccgcgccgcaagacgac
ttcttctcccggccctacgagcccgccgccgccgcgccgcgcgtcgaggccgaagcccgc
cccgccgtggtgccggcccgccggcccgtgggtgttctgctgggcggcaaatcctcctga
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