Castellaniella ginsengisoli: ABRZ00_09290
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Entry
ABRZ00_09290 CDS
T10938
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cgin Castellaniella ginsengisoli
Pathway
cgin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABRZ00_09290 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgin03019
]
ABRZ00_09290 (pnp)
03016 Transfer RNA biogenesis [BR:
cgin03016
]
ABRZ00_09290 (pnp)
Enzymes [BR:
cgin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ABRZ00_09290 (pnp)
Messenger RNA biogenesis [BR:
cgin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABRZ00_09290 (pnp)
Transfer RNA biogenesis [BR:
cgin03016
]
Prokaryotic type
tRNA degradation factors
ABRZ00_09290 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
KH_2
DUF5813
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
XDJ54759
UniProt:
A0AB39FH45
LinkDB
All DBs
Position
1949880..1952018
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AA seq
712 aa
AA seq
DB search
MFNKVSKSFQYGQHTVVLETGEIARQASGAVLVSVDDTVVLATVVASKTAKPGQDFFPLT
VDYVEKTYAAGKIPGGFFKREGKPSEKEVLTSRLIDRPLRPLFPEGFYNDVQVIIHTVSV
NPEVDPDIPALIGASAALAISGIPFNGPVGAARVGYIDGQYVLNPSTSQVRGESQLDLVV
AGTETAVLMVESEARQLSEDIMLGAVVYGHEQMQAAINAIHELVAEAGKPEWDWQPAARN
EVLATAVRAAAFEPLQAVYQLRDKQERTTRLRQVYADVKAKLAEHAAARGDAAPDHVEVE
NMLFALESEIVRGQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVAT
TLGTKQDEQIIDSIMGEYRDRFMMHYNMPPFATGETGRFGVPKRREIGHGRLAKRALAPL
LPSAEDFQYTLRLVSEITESNGSSSMASVCGGSLSMMDAGVPVKDHVAGVAMGLIKEGGK
FAVLTDILGDEDHLGDMDFKVAGTVSGITALQMDIKIQGITKEIMQVALAQAREGRLHIL
GKMRDAIDGSRQELSDFAPRMLSIKINPEKIRDVIGKGGATIRALTEETGCQIDISDDGS
ITIASADLDRAHEAERRIKELTADVEVGQEYQGTVQRLLDFGAIVQVLPGRDGLLHISEI
ANYRIADINDVLKVGQSVRVKIIEADERGRLRLSVKAIGGIEAQGGPAAPAA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaagtgagcaagtcgttccagtacggccagcacaccgtcgtcctggaaacc
ggcgaaatcgcccgccaggcttcgggcgcggtgctggtgtccgtcgatgatacggtggtg
ctggccacggtggtggcttccaagaccgccaagccgggccaggacttcttcccgctgacc
gtcgattacgtcgagaagacctatgcggccggcaagattccgggcggtttcttcaagcgc
gaaggcaaaccctccgaaaaggaagtcctcacctcccgcctgatcgaccgtccgctgcgc
ccgttgttcccggaaggcttctacaacgacgtgcaggtcatcatccacacggtctcggtc
aatccggaagtcgatcccgacatccccgccctgatcggcgcctcggccgccctggcgatc
tccggcattcccttcaatggcccggtgggcgccgcgcgcgtgggctacatcgacggccag
tacgtgctgaaccccagcacctcgcaagtgcgcggtgaatcccagctcgacctggtggtg
gccggaaccgagaccgctgtgctgatggtcgaatccgaagcccgccagttgtccgaagac
atcatgctgggcgccgtggtctacggccacgagcagatgcaggccgccatcaacgccatc
cacgaactggtcgccgaggccggcaagcccgaatgggattggcagcccgccgcgcgcaac
gaagtcctggccaccgccgtgcgcgcggccgccttcgagccgctgcaagccgtctaccaa
ctgcgcgacaagcaggaacgcaccacgcgcctgcgccaggtctacgccgacgtcaaggcc
aagctggccgagcatgccgccgcccgcggcgatgccgcgcccgaccacgtcgaggtcgag
aacatgctgtttgcgctggaatcggaaatcgtccgcggccagatcctgaacggcgaaccg
cgcatcgacggccgcgacacgcgcaccgtgcgcccgatcagcatccgcctgggcgtgctg
ccgcgcgcccacggctccgcgctgttcacgcgcggcgaaacccaggcgctggtggccacc
accctgggcaccaagcaagacgagcagatcatcgattcgatcatgggcgaataccgcgac
cgcttcatgatgcactacaacatgccgccgttcgccactggcgaaaccggccgcttcggc
gtgcccaagcgccgcgagatcggccatggccgcctggccaagcgcgccctggcgccgctg
ctgccctccgcggaagatttccagtacaccctgcgcctggtgtccgagatcaccgaatcc
aacggctcctcgtccatggcctcggtctgcggcggcagcctgtccatgatggacgccggc
gtgccggtcaaggatcacgtggcgggcgtcgccatgggcctgatcaaggaaggcggcaag
ttcgccgtcctgaccgacatcctgggcgacgaggatcacctgggcgacatggacttcaag
gtggccggcaccgtcagcggcatcaccgccttgcagatggatatcaagatccagggcatc
accaaggaaatcatgcaggtggcgctggcccaggcccgtgaaggccgcctgcacatcctg
ggcaagatgcgcgatgccatcgatggctcccgccaggagctgtccgactttgcgccgcgc
atgctcagcatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggcggcgcc
accatccgggcgctgaccgaggaaaccggctgccagatcgacatcagcgacgacggcagc
atcaccatcgccagcgccgacctggaccgcgcccatgaagccgagcgccgcatcaaggaa
ctgaccgccgacgtcgaagtgggccaggaataccagggcaccgttcagcgcctgctggat
ttcggcgccatcgtccaggtcctgcccggccgcgacggcctgctgcacatctcggagatc
gccaactaccgcatcgccgacatcaacgatgtgctgaaggtcggccagtcggtgcgcgtc
aagatcatcgaagccgatgagcgcggccgcctgcgcctgtcggtcaaggcgatcggcggc
atcgaagcccaaggcggtcccgccgctccggccgcctga
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