Corynebacterium glutamicum ATCC 21831: AR0_09080
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Entry
AR0_09080 CDS
T03361
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cgj
Corynebacterium glutamicum ATCC 21831
Brite
KEGG Orthology (KO) [BR:
cgj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgj03019
]
AR0_09080
Enzymes [BR:
cgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AR0_09080
Messenger RNA biogenesis [BR:
cgj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AR0_09080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
NACHT
ResIII
AAA_23
AAA_25
PhoH
ABC_tran
TsaE
Motif
Other DBs
NCBI-ProteinID:
AIK88149
LinkDB
All DBs
Position
1897954..1901862
Genome browser
AA seq
1302 aa
AA seq
DB search
MTTSETAPSKASLYELLEGVSLSDERTFRRRLSKARAPKALGAIKADIDKARLLIDEKSQ
LIPSITYPENLPVSSRRDDIAEAIRDNQVVIIAGETGSGKTTQIPKICLDLGRGRRGLIG
HTQPRRLAARTVAERIADELGQDIGESVGYAIRFDDRVSSHTSVKLMTDGILLAEMQRDR
FLNAYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFAEHFADASG
KPAPIIEVSGRTFPVEIRYRPLEVLDGDKIIDTDPLDGLCSALEELMAEGDGDILCFFAG
ERDIRDAMEAIEARRWKGVEVTPLFGRLSNQEQHRVFSPHSGRRIVLSTNIAETSLTVPG
IHYVVDTGTARISRYSVRTKVQRLPIENISQASANQRSGRCGRVADGIAIRLYSEDDFNS
RPEFTDPEILRTNLASVILRMASLRLGDINDFPFVQAPEQRSIRDGILLLHELGALTDDT
QADGSPQLTQIGKDLANIPVDPRMARMLVEANTLGCLHSVMVIVSALTIQDVRERPLEFQ
AQADQAHARFKDTTSDFLGFLKLWEYIADQRDQSSGNSFRKQMKKEFLHYMRIREWWDLV
RQLEQIGQQLGWAKKEQVAGTASPDIIHQSLLTGLLSQIGSRDGESKEFTGARGTKFLVF
PGSALTKKPPQFIMAGQLVETSRLWARDVAKIEPEWVEKAAGPLLKHQYSEPYWSSKRGA
AMVHRKSTLYGVTIVADKVVPYHTVDPVAARDMFIRHALIEGDWSTHHRFYHDNVAKLEA
IGELEAKARRRDIVVDEDTLFDFYDAKLPSNATTTRNFDSWWKKTSRVTPDLLDFDPDSL
INEDADGVNEEAFPDKWIKGSLIFDLSYHFEPGHRDDGVTVLIPIPVLGGLDTEGFDWLV
PGLRLDLVTELIRTMPKALRRTVVPAPDFAERALPLLRPYMTPLTTQLADALHTLGGQGI
NASDFDPAKLPDHLRISYAAVDRRGKIIDRDRDLEALKKRRANQIRASVSSVAKASEQDE
TTQWTTDTLGTIDEEIETTVDGQSVTAYPALVVTPTGVSVKVMPTKAAADASMITATLTL
LMREIEVSTKQMVKGLPLQQRVAVDNYPHGGAEGLVSDARIAAIRDLMFEHGGAVRSPEE
FDVLLAKVKPDTPGVVRRTVVELAPALVHYASVVSELESWSGPAIDDMTAQLDFLLPKQA
ISIHGISRLRHLPRYLQALTIRLEEMNQNPDRDADRQDEVNFVEEQLEKQLSKLPAARAN
TKEAKDIAWQIQELRISLFAQRLGTPRPVSAQRIQKAIAKLR
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgactacttctgaaactgccccatcaaaggcttccctgtatgaacttttagagggcgta
tccctctccgacgagcgcacgtttaggcgccgactgtccaaagcccgcgcacccaaggcg
cttggtgcgattaaggctgatatcgataaggcacgcttgcttatcgacgaaaagagccag
ttaattccgtctatcacctacccagaaaaccttccggtgagttcccggcgcgatgatatc
gccgaggctatccgtgataatcaggtggttattatcgccggtgagactggttcgggtaag
acgactcagattcctaagatttgtttggacctaggccgtggccggcgtgggctcattggc
cacacacagccacgtcgattagcagctaggaccgtcgccgagcgcatcgccgatgaattg
gggcaagacatcggcgaatcggtgggttatgcgattcgttttgatgatcgagtttcctcg
catacatccgtgaagttgatgacggatggtattttgcttgcggaaatgcagcgggatcgt
ttcctcaatgcgtatgacaccatcatcatcgatgaggcgcatgaacgttccctcaacatt
gacttcattttgggttatttgcgccagttgttgcctaagcgccctgatcttaaagtcatt
attacctccgcaacgattgaccctgagcgtttcgcggagcactttgctgatgcttctgga
aaaccagcaccaattatcgaggtctccggccgcaccttcccggtagagatccgttatcgc
ccgcttgaggtactagacggcgataaaattatcgataccgatccccttgacggtttgtgt
tctgctttggaagagctcatggctgaaggcgacggcgatatcctctgcttcttcgccggt
gagcgtgatatccgcgatgccatggaggcaatcgaggcccgacgctggaaaggtgtggaa
gtcactcccctgtttggccgcctgtccaaccaggagcagcaccgtgtatttagcccgcac
tctggtcgacgcattgtgctttccaccaatatcgcagagacatccctgacggttccgggc
attcactacgtggttgataccggtacggcgcgtatctctcgttattcagtgcgcaccaag
gtgcagcgccttccgattgagaacatttcccaggccagcgcaaaccagcgttctggtcgt
tgtggtcgtgtggcagacggtattgcgattcgtttgtattccgaagatgatttcaactct
cgcccagagttcaccgatccggaaattctgcgcaccaacttggcgagcgttattttgcgc
atggcgtcgctgcgtcttggcgatattaatgatttccccttcgtccaagccccagagcaa
cgctccatcagggatggtattttgctgctccacgagttgggcgcactcaccgacgacacc
caagccgatggttcaccgcagctcacccagatcggtaaagacttagccaacatcccagtc
gatccccgcatggcccgcatgctcgtagaagccaacactctaggctgcctgcattctgtc
atggtcattgtgtccgctctgacgattcaagatgttcgcgaacgccccctggaattccaa
gcccaagctgatcaagcccacgctaggttcaaggacaccacctcagatttcttaggcttt
ttgaaactgtgggagtacatcgccgatcagcgcgatcaaagcagcggcaattccttccgc
aagcagatgaaaaaagaattcctccactacatgcgtatccgcgagtggtgggatttggtg
cgccaattagagcagattggccagcaacttggttgggcaaagaaggagcaggttgcaggc
accgccagccctgacatcattcaccaatccttgctcaccggtctgctctcgcaaatcggt
tcccgtgatggtgagagcaaagaattcacaggtgccagaggtactaaattcttggtcttt
cctggttctgcgctgaccaagaagccaccacagttcatcatggctggccagctggtagaa
acctcacgtttgtgggctcgcgatgtagccaagattgaaccagagtgggtggaaaaagca
gccggcccattgctcaagcaccaatactctgaaccgtattggtcctcaaagcgtggcgct
gccatggtgcaccgcaaatcaacgctctacggtgtgacaattgttgccgacaaggtagtt
ccctaccacacggttgatcccgtggctgcgcgcgatatgttcatccgccatgccctcatc
gaaggcgattggtccactcaccaccgcttctaccacgacaacgtggccaaattggaggca
atcggagaacttgaagccaaggcgcgtcgccgcgacatcgtcgtggatgaagacaccctg
ttcgatttctacgatgccaagcttcctagcaacgccaccaccacccgcaatttcgattcc
tggtggaagaagacatcacgcgtcacaccagatcttctcgatttcgacccagacagtctg
atcaacgaagacgctgacggcgttaacgaagaagccttccccgacaagtggattaaaggc
agcctgatcttcgatctcagctaccacttcgaacccggccaccgcgatgacggcgtcaca
gtcctcatccccattccagtgctgggtggacttgataccgaaggcttcgattggctagtt
ccaggcttaaggcttgatttggtgaccgagttaatccgcaccatgcctaaggctttacga
cgcaccgttgtccctgccccggatttcgccgagcgggccttgccgttactgcgtccctac
atgacaccactgaccacccaacttgccgatgcactccataccctgggcggccaaggaatc
aacgcctctgatttcgatcctgccaaactccccgatcacctgcgcatttcctatgcagca
gtagatcgtcgtggcaagatcatcgaccgcgaccgtgacctcgaagcactaaagaaacgc
cgcgcgaaccaaatcagggcatctgtttctagcgttgctaaggcatccgaacaagatgaa
actacgcagtggaccacagataccttgggcaccatcgatgaagaaatcgagaccactgtc
gatggacagtccgtcaccgcgtaccccgccttggttgtcaccccgactggcgtatccgtc
aaggtcatgcccaccaaggctgctgctgatgcctcgatgatcaccgcaacattgacactg
ttgatgcgtgagattgaagtatccacaaagcaaatggtcaagggactacccttgcaacaa
cgagtcgcagtggacaactatccccacggcggtgccgaaggactggtttctgatgcccgt
atcgccgcaattcgcgatttgatgtttgaacacggcggagctgtgcgttcaccggaagag
ttcgacgttcttctagccaaggtgaagccggacacaccaggagttgttcgtcgaactgtc
gttgagctagccccagcattggttcactatgcatccgttgtgtcagagctggaatcctgg
tctggacctgccattgacgatatgaccgcccagttggatttcctcttgccaaagcaagcc
atcagtattcacggcatcagtaggttgaggcaccttccgaggtatctgcaggcgttgacg
attcgcctagaagagatgaaccaaaatccggatcgtgacgccgaccgtcaagatgaagtg
aacttcgttgaagagcagctggagaaacagctcagtaagctacccgctgcgcgagccaac
accaaggaagccaaggatattgcctggcagattcaggaactaaggatcagcctctttgca
cagcggttaggcactccccgacctgtatcggcgcagagaatccagaaggctattgccaag
cttcgataa
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