Corynebacterium geronticis: CGERO_05525
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Entry
CGERO_05525 CDS
T06788
Name
(GenBank) ski2-like helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
cgk
Corynebacterium geronticis
Brite
KEGG Orthology (KO) [BR:
cgk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgk03019
]
CGERO_05525
Enzymes [BR:
cgk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CGERO_05525
Messenger RNA biogenesis [BR:
cgk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CGERO_05525
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
SH3_HelY
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
AAA_22
AAA_30
nSTAND3
GA_3
Motif
Other DBs
NCBI-ProteinID:
AZA11413
UniProt:
A0A3G6J0U6
LinkDB
All DBs
Position
complement(1158681..1161437)
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AA seq
918 aa
AA seq
DB search
MANHLQEFQARQSFPLDPFQRTACEAIEEDRGVLVCAPTGAGKTIVGEFAVSLALSRGTK
CFYTTPIKALSNQKFHDLVETHGAENVGLLTGDVSINHDADVVVMTTEVLRNMIYAQSAT
LDRLSHVVMDEIHFLADRSRGAVWEEAILNLDEGVRVIGLSATVSNSEEFGRWLNAVRGD
TEVIVDEHRPIPLRQWMMVGKRVHPLFEEGSGGEVNGRLAAHIERIEGVEDTAWKRASSG
GFRSRTPGRGTKPSRSGAPRSRDRYRPIGRPEMLSILDELEMLPAITFIFSRAGCDAALF
QCQRSHLVLTSDEEAAEIARIVDAGVEEIPEDDLKVLGFRQWKAALQRGFAAHHAGMLPA
FRHIVETLFVKGLVRAVFATETLALGINMPARTVVLEKLVKFDGEGHVDLTPGQYTQLTG
RAGRRGIDTIGNAVVQWAPAMDPRQVAGLASTRTYPLNSTFTPGYNMSVNLLQTMGFDAA
HRLIDMSFAQFQADGSVVEEVRALEQAEQKHAKARRHIEALVEQLAPGSNTPVDDIIEYV
DLRARLSDEEKRAHRHNIEQREQEIIKVLGRAQLGDVLAVPSKKRPKLALVVQPASSQRD
PRPWVTFEDGYSARIDATQFAMPPITIGATRVPRPAVAHPRKHARLAVQALAKFGAKRPK
SLKTKPRQRPTALQKELKAALKAHPVHHWADRELFAREAHAYVRAAGDVEKLRQRIGQAT
DSLGKQFDRILDLLEYLDYVEISEGQPVVTAEGENLAKIHSESDLLVAQCLKRGIWNELD
PAELAGVVSMCTFENRRETQGSPEAATETMATAMNGTWRLWEELGVDEQRHQLPISKEPD
AGFALAMHQWTAGAPLEYCMQAAAQSGAELTPGDFVRQARQVIDLLEQVRKTAYNDELPR
TARQAIDAIRRGVVAIGA
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccatttgcaagagttccaagcccggcaatcttttcccctcgatccctttcag
cgcacagcgtgcgaggccatcgaagaagaccgtggggttctcgtctgtgcgcccaccggt
gcgggaaagacgattgtcggagagtttgctgtatccctcgcgctctcacgcggcacgaaa
tgcttttacaccacaccaatcaaggcgctgagcaatcagaagttccacgacttagtagag
acacatggagccgaaaacgtcggattgctcactggcgatgtctcgatcaaccacgatgcc
gatgtggtggtgatgaccaccgaggtgctgcggaatatgatctacgcgcagtccgccacc
ctggacaggctcagccacgtggtcatggacgagatccacttccttgcggatcgttcccgg
ggcgcggtgtgggaagaggcgattttgaaccttgatgagggcgtccgcgtcatcggatta
tcggctaccgtgagcaattcagaggagttcgggcgttggctcaacgcggttcgtggtgat
actgaagtcattgtggacgagcaccggccaattccgcttcgtcaatggatgatggtgggc
aagcgcgtgcacccgctgtttgaggaaggcagcggcggcgaagtcaatggccgcctggcg
gcgcacatcgagcgcatcgagggcgtagaagataccgcctggaaacgagcgtccagcgga
ggatttcgctcacgtacaccaggccgtgggacgaaaccatcacgctcaggtgctcccaga
tcacgtgatcgctaccgtccgatagggcgacccgaaatgctctcgattctggacgaactc
gaaatgctgccggcaatcacctttattttttcacgtgctggttgtgatgccgcattgttc
caatgccagcgttcccacttggtgctcacctccgatgaagaggctgcagaaattgcccga
atcgtggacgccggcgtggaagagatccccgaggatgacctcaaggtacttggctttagg
caatggaaggccgcgctgcagcgcggttttgcggcacaccatgccggcatgctgccagca
tttcggcacatcgtagaaaccctttttgtcaaagggttggttcgagccgtctttgccacc
gagacgctcgctctcggtattaacatgccagctcggacggtcgtgttagaaaaattggtg
aagtttgacggcgaggggcacgtggatctcaccccaggtcagtacacacaattgaccggc
cgtgcggggcgtcgtggcatcgatacgatcggcaacgcagtggtgcaatgggcccctgca
atggatccgcgtcaagtggcaggacttgcttcaacccgcacgtacccgctgaactccacc
ttcacccccggttacaacatgagtgtcaacctgctgcagaccatgggctttgacgctgcc
cacaggctcattgacatgtccttcgcccagttccaagcagatggttcagtggtggaagaa
gtccgagcacttgaacaagcggaacaaaaacatgccaaggccagaaggcacatcgaagcg
ctcgttgagcaactggcaccaggcagcaacactccggttgacgacatcatcgagtacgtg
gatctgcgggcacgcctgagcgacgaggaaaaacgggcacaccgtcacaacattgagcag
agagaacaagagatcatcaaggtgctagggcgagcacagcttggcgacgtcctcgcggtg
ccctccaaaaagagaccaaagctcgctttggtcgttcaacctgcaagttcgcagcgtgat
ccgcgaccctgggtcacgttcgaagacggctattcggcaagaatcgacgccacgcaattc
gccatgccgcccatcaccatcggcgcaactcgagtgcctcgacccgccgttgcacacccg
cgtaaacacgcgcgcctagccgtgcaggccttggccaaattcggggctaaacggcccaag
tcattaaaaacgaagcctcgccagcggccaactgctttgcaaaaagagctcaaagcagcc
cttaaagcgcacccggtccaccactgggcggatcgagaactgtttgcccgcgaagcccac
gcgtatgtgagggctgcgggggacgtcgaaaagctccggcagcggatcggccaagccact
gacagcctgggtaaacaattcgaccgcattttggatctgctggaatacctcgattacgtg
gaaatcagtgagggacaacccgtggtgaccgccgaaggtgaaaacttggctaagatccac
agcgagtcggacctgttggtggcgcaatgccttaagcgtggcatctggaatgagttggat
ccagcagaattggccggggtggtgagcatgtgcacctttgaaaatcgtcgggaaacgcag
gggtcgccggaagccgccacggaaaccatggccactgcaatgaatggaacatggcgcctg
tgggaggaactcggcgtggatgaacagcgccatcagctcccaatttccaaggaacctgac
gcgggctttgccttggccatgcatcaatggaccgcaggtgcgccgttggaatattgtatg
caggccgccgcacaatccggtgctgaactgacgcccggcgacttcgtccgccaagcccgt
caggtgattgacctgctcgaacaagtgcgcaagaccgcatacaacgacgaactgccgcgc
accgcccggcaggcgatcgacgctattcgacgcggcgtggtggccatcggagcctaa
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