Chryseobacterium gleum: NCTC11432_02723
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Entry
NCTC11432_02723 CDS
T07042
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cgle
Chryseobacterium gleum
Pathway
cgle03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgle00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11432_02723 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgle03021
]
NCTC11432_02723 (rpoC)
03400 DNA repair and recombination proteins [BR:
cgle03400
]
NCTC11432_02723 (rpoC)
Enzymes [BR:
cgle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11432_02723 (rpoC)
Transcription machinery [BR:
cgle03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11432_02723 (rpoC)
DNA repair and recombination proteins [BR:
cgle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11432_02723 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
VEE08542
UniProt:
A0A3S4R2U4
LinkDB
All DBs
Position
1:complement(2877010..2881275)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIARMGAEAVEDLLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKQLDSTETMKVK
GEGLAFYSPEEAEIAYAEGKVSLNAKVRCKLPVKENGEIVTRLIETTVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIAQSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
KISERILGRVSLHNVYDPETDELITEADQVITEQLAKRIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNESRTPLMVANVPYGSILSVKP
GDKVKKGDTICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPEDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLKREDLALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
IDDLNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaagactcaagaggggaggttttaaaaccggaaactattaactacaga
actcacaaacctgaaagagacgggctattctgtgagaaaatctttggtcctgtaaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggagtagaagttactgagaagaaagtaagaagagagagaatcgggcacatcaacctt
gtagttccaattgcacacatctggtatttccgttcattaccaaacaaaatcggatacctt
ttaggaattccttctaagaaattagatatgatcatctactacgaaagatatgtagtgatc
cagcagggtattgctaaaaaattagacggttctgattttgaaaacatggaattccttaca
gaagaagagtacctggatatcatggaaactcttcctgtagaaaaccagtatcttgatgat
tctgatccaaacaaattcatcgccagaatgggtgctgaagctgtggaagatcttttaaaa
agaatcgatcttgatgcattgtctttcgacttgagacacaaagctcacaacgaaggttca
aaacaaagaagaacagaagctcttaaaagattgaacgttgtagaggcattaagaggtgcc
aatacaagaatgatcaacagaccggagtggatgatcatgcgtgtacttcctgttatacca
ccagaactaagaccattggttccattggatggaggacgtttcgctacttctgacttaaat
gacctttatagaagagttattatcagaaataaccgtttgaagagactattggagatcaaa
gctcctgaagtaatcttgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataacacaagaaaatcttctgcagtaaaatctgaatcaaacagaccattgaaatca
ctttctgattcattgaaaggtaagcaaggtcgtttccgtcagaacctactagggaaaagg
gttgactactctgcgcgttcggtaattgttgtaggtccgaacctacagcttcacgaatgt
ggtattcctaaagatatggcagctgaactttacaaaccgttcatcatcagaaaactgatt
gaaagaggtattgtaaaaacagtaaaatctgcaaagagaattatcgacagaaaagaaccg
gtagtttatgatatccttgaaaacgtgatgaaaggtcacccggtactattgaacagggca
cctactcttcacaggctgggtattcaggctttccaacctaagatgatcgaaggtaaggca
atccagctacacccgttagtaactacggccttcaacgccgatttcgatggtgaccagatg
gcggtacacttgccgttaggaccagaagcgatccttgaagctcagttattgatgttaggt
tctcagaacattctaaaccctgcaaacggttctccaattacggtaccatctcaggacatg
gttcttggtctttatttcatgaccaaacagttggattcaactgaaactatgaaagtaaaa
ggtgaaggtcttgcattctattctcctgaagaagcggaaattgcttatgcagaaggaaaa
gtttctctaaatgctaaggtaagatgtaaattacctgttaaggaaaacggagaaatcgta
acaagactgatcgaaactactgtaggtagaattttattcaaccagattgtacctaagcag
gtaggatatatcaatgaacttcttaccaagaaatcattgagaaacgttatcggtaagatc
cttgctgatacagatttccctacaactgtgaagttcttggatgcaatgaaagatctaggg
tattcaaatgcattcaaaggaggtctatcgttctctcttggagatatcgtagtacctgtg
gagaaaaagcagatgattgcacaatcaattgaaactgtagacgaaattagagctaactat
aacatgggtctaattaccgatacagaacgttataaccaggtaatcgacgtttggacaaac
accaacgccggattaactgaaatgatcatgagcagaatgaaaactgaccaaggtggtttc
aactctgtatatatgatgcttgactctggagcgaggggttctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcagaaagccggttctaccggagcggag
atcatcgaaaacccgatccttgcgaactttaaggaaggtctttcgattctagagtacttt
atctctacccacggtgcccgtaaaggtcttgcggataccgctcttaagacagccgatgcc
ggttacttaacgagaagattggtagacgttgcacaggacgttatcgttacagaagacgac
tgtggaacattaagaggtacagaagttactgcacttaagaaaaatgacgagatcgttgaa
aaaatctctgaaagaatcttaggtagagtatctttacataatgtttacgatcctgaaaca
gatgaattaatcactgaggctgaccaggtaattactgagcaattagcgaagagaattgag
gaggctggattagaagctgttgaggttcgttcaccattaacttgtgaggctaagaaaggt
atctgtgcgaaatgttacggtagaaacttagcaacaggtaagatgatccacatgggtgaa
gcggtaggtgtaattgcagcacaatcaattggggagccaggtactcagcttacgttgaga
actttccaccaggggggtactgcaggaaacgtatcggaaaacccatctatcgttgcaaga
agagatggtatcgttgaaatggatgaagtaagaacaattacttctgaagatgaaaacggt
aatactgctgaggttgtggtttcccgttcaacagaattcagattagttgctgataatgag
tcaagaactccattaatggtagctaacgtaccttacggatcgatattatctgtaaaacca
ggtgataaagtgaagaaaggagatacaatctgtagatgggatccgtataacgcggttatc
attgctgaaacttcaggtaaggtagaatacgaggatatcatccaaggtatttcattccag
cttgaaattgacgaacagacaggatttgaagagaaagtaatttctgaatccagaaataag
aaagccgtacctaccttgaaagtggtagactctaaaggagttgagcaaaaagcttacaac
ttaccggtaggagcccacttaatggttaacgatggtgaaaaaattaaggcgggtaaagtc
ttaatcaagatcccgagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttaccgaattattcgaagcaagaaacccttcaaacccagcggttgttactgaaatcgac
ggggtagtttcttacggaaaaatcaagagaggtaaccgtgaacttattgttgaggctaaa
actggtgaaagaaagatttacctggtaaaactttccaaccagattcttgttcaggagaat
gacttcgtaagagcaggttctccgctttctgacggttctatcacaccggaagatatctta
agaattaaaggtccaacagctgttcaggaatacttagtaaacgagattcaggaagtttac
cgtctacagggggtaaaaatcgacgacaagcacttcgaaattatcgtaagacagatgatg
acgaaagtatctattgtagatggaggtgatactcagttccttgaaggagctcttgagcac
aagtatgatttcttggaagaaaacaacagagtatttggtcttaaagtagtagtagatgct
ggtgattctaaagaattcaaaccaggtcagatgattactgcaagagaattaagagatgaa
aactctaagttgaagcgtgaagatttagcattggtagaagtaagagaagctcttcctgct
acagcaactcctgtactgcaaggtattacaagagctgcccttcagactaaatcattcatg
tctgcagcatcgttccaggaaaccactaaagttcttaacgaggcagcagttgctggtaag
atagacgatcttaacggtcttaaagaaaatgtaattgtaggacacagaattcctgcaggt
acaggtcttaaagagtatcagaacgttattgtaggttctaagaaggaattcgaagacctt
aactaa
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