Chryseobacterium gleum: NCTC11432_03082
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Entry
NCTC11432_03082 CDS
T07042
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cgle
Chryseobacterium gleum
Brite
KEGG Orthology (KO) [BR:
cgle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgle03016
]
NCTC11432_03082 (rtcB_1)
Enzymes [BR:
cgle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCTC11432_03082 (rtcB_1)
Transfer RNA biogenesis [BR:
cgle03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCTC11432_03082 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
NCTC11432_03082 (rtcB_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
VEE09215
UniProt:
A0A3S4MR08
LinkDB
All DBs
Position
1:complement(3270050..3271441)
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AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKLGYPNNQSVNVALEVMKRNFATKNIHHVRSLLKEILLNPESFEKDLT
FGQIAETLLSSKKTEKRMLNSQRAPFQIFGNNISEEAKNQLYTALKLPVSTQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLEGARDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDMIPILRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRMATEQCPLPKEAQNFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNFAWKEIHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPESLNSASHGAGRAHSRGECRSLFTQHDIKKELKLKNV
TLIGGNAEEAPMAYKDINEVMNAQSELVDILGTFQPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactgggctatccaaataaccaa
agcgttaatgtagcattggaagtcatgaaaagaaattttgcaaccaaaaatattcaccat
gtaagatctctcttaaaggaaattctgctgaatccggagagctttgaaaaagatctcacc
ttcgggcaaattgcagaaaccctgctttcgtccaaaaaaacagaaaagagaatgctgaat
tcacagcgtgccccgtttcagatttttggaaacaacatttcggaagaggcaaaaaatcag
ctatacacagcattaaaactgcctgtttctactcagggagcattaatgccggatgcccac
agcgggtacggtcttccgataggaggagttctagcggtagaaaatgcagtaattccttac
ggagtaggaatggacattggctgcagaatgagcctcagtattttggatacaccggtatca
tatcttgaaggagcaagggataagtatgaaaaagctcttgctgaacatacaaaattcggg
atgtatgaaacgcataaatctcacatagatcatgagattttcgacagggatacatttgat
atgattccgatcttaagaagattaaagggaaaagccatcaaacagatgggatcctcaggc
ggaggaaatcactttgtagaattcggagaagtggaaatcactgaagaagacgaacaaatt
ggcctgccaaaaggaaaatatctgggaatactttctcacagtggctcaagaggcctgggg
gcagaaatagcacagtattattcaagaatggcgacagaacaatgtccgttaccaaaagaa
gcacaaaacttcgcatggcttgatctgagtactcatctgggactggaatactggaccgca
atgaatctcgccggggattatgcttcagcctgtcatgatgatattcacagaaggctcgtt
aaagcggttggtggaagagtaaaagccagaattgagaaccatcacaattttgcatggaaa
gaaatccataatggaaaagaagtgattgttcaccgaaaaggagcaacgcctgccaatgaa
aatgaactgggaatgatcccgggatccatgacagcaaaaggatttattgtgcgtggaaaa
ggaaatccggaatccctgaattcagcatcacatggagctggaagagcacattccagagga
gaatgcagaagcctttttacccagcatgatatcaaaaaagaactgaagctgaaaaatgtc
accctgataggcggaaatgcagaggaagcaccaatggcctacaaagacattaatgaagtg
atgaatgcgcagagtgaactggtagatatcctgggaactttccagccgagaattgtgaga
atggacaggtag
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