Cotesia glomerata: 123260358
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Entry
123260358 CDS
T07738
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cglo
Cotesia glomerata
Pathway
cglo03013
Nucleocytoplasmic transport
cglo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cglo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123260358
03015 mRNA surveillance pathway
123260358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cglo03019
]
123260358
Enzymes [BR:
cglo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123260358
5.6.2.5 RNA 5'-3' helicase
123260358
Messenger RNA biogenesis [BR:
cglo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123260358
mRNA cycle factors
Common to processing body (P body) and stress granule
123260358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
NPHP3_N
ATPase
SRP54
AAA_16
nSTAND3
AAA_22
AAA_10
AAA_7
AAA_32
AAA
AAA_5
Motif
Other DBs
NCBI-GeneID:
123260358
NCBI-ProteinID:
XP_044577336
LinkDB
All DBs
Position
LG3:complement(2587878..2597111)
Genome browser
AA seq
1117 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDSAQSQPNQ
SVQINGTNGSSALDLKISGAAQNLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSADEKRYRLLKKASEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLVKID
FPWPVPEKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNSANPGSHFMSTSMYDAREALIPGSVYDRTGQVNGQSHNPYYQRNIPLDMFSRTHD
TISYISPERAQAAINNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNVQRNRRGVKKMPV
GPRMGKFSQSDINTQPYNSQGGALPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVGD
FQSQMDGLLSQDSTYQGDRSGFYQGQSQPSGQFSQPY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtatggacccagtagccaaactttgacctttttggacaccgaggaa
gccgatttaattggagcagatactcaaggcagtgaatttgacttcacagactttactttg
ccatctccgagccagactcaggcttcgcaacatgattccgctcagagtcagcccaaccaa
tctgtccagatcaatggaactaacggaagctcagcattggacttgaaaatatctggtgct
gctcaaaacctcgcagagttacagtttgaggaagaagaagaggaggcttattacaaccgt
gatttgccggatcatgcgtgtaaatactgcggtattcacgaagcttcgtgtgttgttatg
tgcaatgtttgcaggaagtggttctgcaatggacgaggcaacacatcggggtcacatatt
attaatcatcttgttcgtgctaagcataaggaagttacacttcacagagatggaccattg
ggtgaaacagtgctagagtgctactcttgtgccgtaaggaatgtctttgtcctcggtttt
atcccagcaaaagccgactctgtcgtggtcttactttgccgacaaccatgtgctgctcaa
agttcattaaaagatatgaattgggatcaagagcaatggaaaccgctgatagaagaccgt
agtttcttatcatggctcgtaaaaatcccttccgagcaagagcaactccgagcgcgtcaa
atatccgctcaacaaataaacaaactcgaagagttatggcgcgacaacgtagacgcaact
ttccaagaccttgaaaagcctggtgtcgatgaggaaccccagcaagttttactacgctac
gaagacggctaccagtaccagaacatcttcggaccattggtaaaactcgaggcggactac
gacaagcggctcaaagaatctcagacccaagaaaacatcgaagtccgctgggacgtgggc
ttgaacaagaaaaccatcgcttacttcatgctcgcaaaaaccgacggtgacatgaaattg
atgcacggagacgagctaagactcagatacctcggcgagcttcacaaaccttggtccgga
atcggccatgtaataaaaatcccggacaactacggcgaggaggtcggaatcgagctgaaa
aacaactcaggagctccaacagagtgcgtcagtaactttgtcgtggacttcatctggaag
agcaccagcttcgaccggatgcaattagccttgaggaagttcgccgtcgacgacacttcc
gtctctgcttacatctatcaccgcctcttgggccacgaagtcgaagaagtcctgttccgt
tgccacctaccaaaacacttcagcgctccgaaccttcccgacttgaaccgatcccaagtc
tacgccgttaagcacgcagtacagcgccccctgtctcttattcaaggccctcctggaacg
ggcaagaccgtcaccagcgccacaatagtctatcaattagtaaagcaaaacggtggccct
gttttagtctgcgcgccttctaacactgccgtggaccaacttacagaaaaaatccacaaa
tctaacttaaaagtcgtgcgcctctgcgccaagtctcgggaagcaatcgactctccggtg
agtttcctggcgctgcacaaccagatcaagaacatggagaccaatactgagttgcaaaag
ctccaacaattgaaagacgaaaccggagaattgtcatcagcagacgagaagcggtacaga
ttattaaaaaaagcttcagaaaaagaacttctggaagccgctgatgtaatttgctgcaca
tgtgttggagcaggtgacccacggctgcatcgtttgaagttccactcaatattaatcgac
gaaagcatgcaagcaacagaacccgaatgtatggtcccggtggttctcggagccaagcag
ttgatcttagttggtgatcattgccaactgggtcctgtggtgatgtgcaagaaagcagct
cgcgctggcttgtcccagtctctctttgaacgcctagtagttctgggaattagacccttc
agactagaagtacagtatcgtatgcacccagacttatcccggtttccttcaaactttttc
tacgaaggctcgttacaaaacggagtttgcgctgacgaacgcaagctcgtaaaaatagac
ttcccctggccggttccggagaagccgatgttcttctacgtgactcaaggccaggaagaa
atcgccggtagtgggacttcttacttgaaccgcacggaagcttctaatgttgagaaaata
actacgaggttcttgcgctgcggagtcaagcccgagcaaattggtgtgattactccttac
gagggtcagcgagcgtacttggttcagtacatgcagtaccagggttccttgcatgctaag
ttgtaccaggagattgaagtcgcgagcgttgacgcttttcagggcagagagaaggatatt
attatcatgtcctgtgtgaggtctaatgagcatcagggaattgggttcctcaacgaccct
cggcggcttaatgttgctcttactagagctaagtatgggattattattgtggggaatcca
aaagttctgtccaagcagccgctctggaatcacttgctgaatttttataaggaacagaag
gttcttgttgagggacctttgaataatttgaaggagtcgatgattcagtttgctaaacca
aagaaacttgttaactctgcgaatcctgggtcgcactttatgtcgacctcgatgtacgac
gcgagagaggctcttattcccggctcggtttatgaccgcaccggacaagttaatgggcag
tcgcataatccgtattatcaacggaacatcccgctggatatgttcagcaggactcatgat
actattagttatatcagtccagagcgcgctcaagctgcgattaataacgtcccggttcct
gtggggatgttcatgaacatggcgcatgttcctcccaggttctacaatcagcaccagcag
gccttgcaagcgagacagaatgtccaaaggaacaggagaggggttaagaagatgccagtt
ggacccagaatgggcaagttcagtcagagtgatattaacacccagccgtataatagccaa
ggaggagccttgccgcttacgcaaggcactactcaagggatgtctcagcctgggtttagt
ttgtcccagccgggattatctcaagcagagttgtctcaggactcgttcgcggttggcgat
tttcagtcccagatggacggactgctcagtcaggactcgacttatcaaggagatagaagt
gggttctatcaaggacagtctcagcccagtggacaattctcacagccgtactga
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integrated database retrieval system
