Cotesia glomerata: 123265632
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Entry
123265632 CDS
T07738
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cglo
Cotesia glomerata
Brite
KEGG Orthology (KO) [BR:
cglo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cglo03016
]
123265632
Enzymes [BR:
cglo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
123265632
Transfer RNA biogenesis [BR:
cglo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
123265632
Prokaryotic type
tRNA splicing ligases
123265632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
123265632
NCBI-ProteinID:
XP_044585385
LinkDB
All DBs
Position
LG5:23380687..23384402
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AA seq
506 aa
AA seq
DB search
MVVRKYEDELKYLEKINDYCWRIKMGFQPNMKVEGVFYVNKTLEKLMLEELRNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDINDPKSIVSPGGVGFD
INCGVRLLRTNLWERDVAPVKEQIAQSMFDHIPVGVGSKGIIPMKAADLEEALEMGMDWS
LREGYSWAEDKEHCEEYGRMLNADPSKVSERAKKRGLPQLGTLGAGNHYAEIQVVDEIFD
KSAACKMGIEEKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDNIETNDRQLACAHIN
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFHMAPDDLDMQVIYDVSHNIAKVE
EHLVDGKLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTAQGM
RETFGSTCHGAGRALSRAKSRRNLDYQDVLNKMESMGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagaaagtatgaagatgagttaaaatatctcgaaaaaattaatgattactgc
tggcgtataaaaatgggatttcaaccaaatatgaaggtcgaaggagtattttacgtgaac
aaaaccttagaaaaactaatgttagaagagcttcgaaattcctgccgccctggagcagtt
ggcggatttctacccggagtgaagcaaatcgcgaacgtagcagcgctaccaggaatagtc
ggaaggtcagtagggctcccagacgtgcattcaggctacggcttcgcgataggaaacatg
gcagcattcgacataaacgacccgaagtccatagtctccccaggaggcgtaggcttcgac
ataaactgcggagtccgtttgctgagaacgaatctctgggaaagagacgtggctccagtg
aaggaacaaatagcccaaagcatgttcgaccacattccagtgggagtgggttccaagggg
ataattcccatgaaggcagccgacctggaggaggctctggagatgggaatggactggtcg
ctccgcgaagggtacagctgggcggaagacaaggagcactgcgaagagtacgggcgaatg
ctcaacgcagatccttcaaaggtttctgaacgcgcgaaaaaacgcggacttccccagctt
ggaactctcggtgccgggaaccattacgcggaaatccaagtggttgatgaaatttttgac
aagtcagcggcctgcaagatggggatcgaagagaaaggccaggtttgtgtgatgattcac
tcaggaagccgcgggttcggccaccaggtggcgactgacgctctagtagccatggagaag
gcgatgaagcgtgataacattgaaacaaatgataggcagctggcttgcgctcatattaat
tctcaggaaggtcaggattatttaaaatcaatggctgctgcggcgaacttcgcctgggtg
aaccgcagctccatgaccttcttaagtcgacaagcttttgctaagcagttccacatggct
cccgatgacctggacatgcaggttatctacgacgtgtctcataatatcgccaaggttgaa
gaacacctagttgatggcaagctcaagactctcctggttcacaggaaaggttctacccgc
gcttttccccctcaccatcctctcattccggtggattatcagttaacaggacagccggtg
cttattggaggaactatgggaacctgcagctatgttctcactggaactgcacagggcatg
cgcgaaactttcggttccacttgccacggcgctggtcgcgcactctctagggccaagtcg
cgcaggaatcttgattatcaagacgtgctgaataaaatggaaagcatggggatttctatt
agggtcgcttctccgaagctggttatggaggaagccccggagtcttataagaatgttact
gatgttgttgatacttgtcacgctgctggcatttcgaagaagtgtatcaagttacggcct
attgcggttattaagggatga
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