Cotesia glomerata: 123272368
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Entry
123272368 CDS
T07738
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cglo
Cotesia glomerata
Pathway
cglo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cglo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123272368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cglo03019
]
123272368
03041 Spliceosome [BR:
cglo03041
]
123272368
Messenger RNA biogenesis [BR:
cglo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123272368
Spliceosome [BR:
cglo03041
]
Complex B
Other components
Prp19-related factors
123272368
Complex C
123272368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
TPR_10
Mad3_BUB1_I
PPR
DHR-2_Lobe_A
NRDE-2
Motif
Other DBs
NCBI-GeneID:
123272368
NCBI-ProteinID:
XP_044595018
LinkDB
All DBs
Position
LG10:complement(13904744..13908607)
Genome browser
AA seq
850 aa
AA seq
DB search
MNQKISFDGNVYEFHDDDLPYEEEILRNQHSVRHWLRYLDHLKSTKSTNLSIVYERSLKE
LPGSYKLWYGYLSHRVSQLKNRRLDDPLYEDVNNAFERALIFMHKMPRIWIDYCTLMTEQ
CFITRTRHIFDRALRALPITQHHRIWPLYLDFVKSHDIPETGIRVFRRYLKLAPEDTEDY
IEYLISIGRLDEAAIKLAHIVNQDDFISKHGKSNHQLWNELCDLISKNPDKIKSLKVDPI
IRGGLRRYTDQVGSLWNSLADYYIRSGLFERARDIYEEAIQTVSTVRDFTQVFDAYSQFE
EIATKKRMEEVSKNPNRTEDDEVELDLRLERFEHLMERRPLLLNSVLLRQNPHNVPEWHK
RVKLYEGQPHEIINTFTEAVQTVKPQLAVGKLHTLWVAFAKFYEENGQLSDARVVFEQAT
HVPYTKVDDLASVWCEWAEMELRHFTGNRPEEAMKLMHRATAMPSRKVGYYDETETVQMR
LYKSLKVWSMYADLEETFGTVKTCKAIYDNIIDLKIATPQIIINYGMYLEDQKYFEEAFR
AYEKGIAMFKWPNVFDIWNTYLVKFLNRYKGSKLERTRDLFEQCLEHCPPKYAKVFYLLY
AKLEEEYGLARHAMNVYDRAIKAVPTEEKFELFNIYIKKVAEIYGMPKTREIYTQAIEVL
PEDKSREMSLRFAEMETKLGEVDRARTIYIHCSEICDPRVTSRFWQIWKEFEVRHGNEET
MREMLRIKRSVQAMYNTQINMMTAQMLNSTTPTENTVDAMRLLDMKAADSGEAPQGSAPA
PPRGTISFVRSITEGGKDDGKVKNPDEIELDLDSEEETEEIEEEEVPVEKQAIPSEVFGG
LKPVEEMEQD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaaaatttccttcgatggaaacgtatatgaatttcatgacgatgaccttcca
tacgaagaagaaattctccgcaaccaacactcggtgagacactggctgcggtacctggat
caccttaagtccaccaaaagcacaaacttaagcatcgtatatgagcgttctttaaaagag
ctccccggtagttacaaactgtggtacggatacttgagccaccgggtgagtcagttaaaa
aaccgtcgacttgatgatccgttgtacgaagacgtgaacaacgcctttgaacgggcgttg
attttcatgcataaaatgccacgtatttggatcgactactgcacattgatgacggagcag
tgcttcatcacgagaactagacacatattcgaccgggctctgcgagctctcccgatcacc
caacaccaccgtatctggcctttgtatttagacttcgtcaaaagccatgatataccggag
accgggatcagagtcttcaggaggtacctcaagctcgctccagaagacacagaagattac
atcgagtatttaatttcaatcggccgcttagatgaagctgctatcaagcttgcccacatc
gtcaaccaagatgacttcatctccaagcacggaaagtcgaaccaccagctctggaacgag
ctttgcgacttgatttccaaaaatccggacaaaatcaagtcgctgaaggtagacccgatc
atcagaggcggtctcaggcggtacactgaccaagtaggctccctctggaactccctagcc
gactactacatccgcagcggcttgttcgaaagagccagggacatttacgaggaagcgatt
caaactgtatcgacagtcagagacttcacccaggttttcgacgcttactcgcagttcgaa
gaaatagcgacgaagaaacgcatggaagaagtcagcaaaaaccccaacaggactgaagac
gacgaagtggagctagacctacggctcgagagattcgagcaccttatggagcgaagacct
ttgcttctcaactcagttctcctgagacagaaccctcacaatgttcctgaatggcacaag
cgtgttaaactctacgaagggcagcctcatgaaataatcaacacttttacagaagcagtc
cagacagtgaagcctcaattagctgttggaaaacttcacaccctctgggtggcctttgca
aagttctatgaagaaaacggacagttgtctgatgcgagagtggtctttgaacaggccact
catgttccgtatactaaagttgatgatctagcttctgtgtggtgcgagtgggcggagatg
gagcttcgccacttcactggcaatcgcccggaggaagctatgaagttgatgcatcgcgcc
actgcgatgccgtccaggaaagtcgggtactacgacgagacagagacggttcagatgagg
ctgtacaagtccttgaaggtttggtcgatgtacgctgacctggaagagacttttgggact
gtgaaaacctgcaaggctatctatgacaatataattgatctgaaaatagctacgcctcag
attatcatcaactatgggatgtatttggaggatcagaagtactttgaagaggctttcaga
gcttatgagaaaggaattgcgatgttcaagtggccgaatgtcttcgatatctggaacact
tatttggttaaatttttgaacaggtacaagggctcaaaattagaacggacacgtgatttg
ttcgaacaatgtttagaacattgtccgccaaaatatgcaaaagtgttttatttattatac
gcaaagcttgaagaagaatatggacttgctagacacgcgatgaatgtttatgatcgcgct
atcaaggctgtgcctactgaagaaaagtttgagctgtttaatatttatattaagaaagtc
gctgagatttacggcatgcccaagaccagggaaatttacacccaagctattgaggtcctt
cctgaagacaagtcccgagaaatgtcgctgaggttcgcggagatggagaccaaacttggt
gaagttgatcgagctaggactatttatattcattgcagcgaaatttgcgacccgcgagtt
acgtcgaggttctggcagatttggaaggagttcgaagtccgtcatgggaacgaggagacg
atgcgtgagatgctgaggatcaagaggagtgtgcaggcgatgtataacactcagattaac
atgatgacggcccagatgctaaacagtactactcctacggaaaatactgtggatgcgatg
agattgctggacatgaaggctgctgattctggagaagctccgcaaggaagtgcaccagct
cctccaagaggcacgataagctttgtaagaagtatcaccgagggaggaaaggatgatgga
aaggtgaaaaatccggatgagattgaattagatcttgacagtgaagaggagacagaggag
attgaagaggaagaagttcccgtggaaaaacaggcgattccttcggaagtttttggaggg
ttgaagcctgttgaagaaatggaacaagattaa
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