Chryseobacterium gallinarum: OK18_04890
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Entry
OK18_04890 CDS
T03954
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cgn
Chryseobacterium gallinarum
Pathway
cgn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OK18_04890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgn03021
]
OK18_04890
03400 DNA repair and recombination proteins [BR:
cgn03400
]
OK18_04890
Enzymes [BR:
cgn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OK18_04890
Transcription machinery [BR:
cgn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OK18_04890
DNA repair and recombination proteins [BR:
cgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OK18_04890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl
RnfC_N
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AKK72062
UniProt:
A0A0G3M4X5
LinkDB
All DBs
Position
complement(1073788..1078053)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFEHMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIARMGAEAVEDLLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINKPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGKVSLNAKVRCKLPVKENGEIVTRLIETTVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIAQSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
KISERILGRVSLHNIYDPESDELIAEADQVITEQLAKRIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNDSRTPLMVANVPYGSILSVKP
GDKVKKGDVICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPEDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLKREDLALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
IDDLNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaggactcaagaggggaggttttaaagccggaaactattaactacaga
actcacaagcctgaaagagacgggctattctgtgagaaaatttttggtcctgtaaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggagtagaagttactgagaaaaaagtaagaagagagagaatcgggcacatcaacctt
gtagttcctattgcacacatctggtatttccgttcattaccaaacaaaatcggatacctt
ttaggaattccttccaagaaattggatatgatcatctactacgaaagatatgtagtgatc
cagcagggtattgctaaaaagctggatggttctgattttgagcatatggaattccttaca
gaagaagagtatcttgatatcatggaaacccttcctgtagaaaaccagtatcttgatgat
tctgatccaaacaaattcatcgccagaatgggtgctgaagctgttgaagatttattaaag
agaatcgatcttgatgcattgtctttcgatttaagacacaaagctcacaacgaaggttcc
aagcagagaagaactgaggcattaaaaagattaaatgttgtagaagcattaagaggtgct
aatacaagaatgatcaacaaacctgagtggatgatcatgcgtgtacttcctgttatcccg
ccagaactaagaccattggttccgttggatggaggacgtttcgctacttctgacttaaat
gacctttatagaagagttattatcagaaataaccgtttaaagagattattggagatcaaa
gctcctgaagtaatcttgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataacacaagaaaatcttctgcagtaaaatctgaatcaaacagaccattaaaatca
ctttctgattcattgaaaggtaaacaaggtcgtttccgtcagaacttactagggaaaagg
gtagactactctgcgcgttcggtaattgttgtaggtccgaacctacagcttcacgaatgt
ggtattcctaaagatatggccgctgagctttacaaaccgtttatcattagaaaactaatt
gagagaggtattgtaaaaacagtaaaatctgcaaaaagaattatcgacagaaaagaacct
gtagtgtatgatatccttgaaaacgtgatgaaaggtcacccggtactattgaacagggca
cctactcttcacagattgggtattcaggccttccagcctaagatgatcgaaggtaaagca
atccagctgcacccgttagtaactacggccttcaatgccgactttgatggtgaccagatg
gcggtacacttaccgttaggaccggaagcgatccttgaagctcagttactgatgttaggt
tctcagaacatcctgaaccctgcaaacggttctccaattacggtaccttctcaggacatg
gttcttggtctttatttcatgactaaagaattaagctctacagaagatatgaaagtaaaa
ggagaaggtcttgcattctattctcctgaagaggcggaaatcgcttatgcagaaggaaaa
gtttctctgaacgctaaggtaagatgtaaattacctgttaaagaaaatggagaaatcgta
acaagactgatcgaaactactgtaggtagaattttattcaaccagatcgtacctaagcag
gtaggatatatcaatgaacttcttacgaagaaatcattgagaaacgttatcggtaagatc
cttgctgatacagatttccctacaactgtgaagttcctggatgcaatgaaagatctaggg
tattcaaacgcattcaaaggaggtctgtcgttctctcttggagatatcgtagtacctgtg
gagaaaaaacagatgattgcacaatcaattgaaactgtagacgaaattagagctaactat
aacatgggtctgattaccgatacagaacgttataaccaggtaatcgacgtttggacaaac
acgaacgcaggattaactgaaatgatcatgagcagaatgaaaactgaccaaggtggtttc
aactctgtgtacatgatgcttgactctggggcgaggggttctaaggaacagatccgtcag
ttatcagggatgagaggtttgatggcgaaaccgcaaaaagctggttctaccggtgcggag
atcatcgaaaacccgatccttgctaactttaaagaaggtctttccatcttggaatacttt
atctctacccacggtgcccgtaaaggtcttgcggataccgctcttaaaactgccgatgcg
ggttatctaaccagaagattggtagacgttgcacaggatgttatcgttacagaagatgac
tgtggaactttaagaggaacagaagttactgcacttaagaaaaatgacgagatcgttgaa
aagatttctgaaagaatcttaggtagagtatctcttcataatatttacgatcctgaaagt
gatgaattaattgctgaagcagatcaggtaatcactgagcaactagctaagagaattgaa
gaagcaggattagaagccgtagaagtacgttctccgcttacttgtgaagctaagaaaggt
atctgtgcgaaatgttacggtagaaacttagcaactggtaagatgatccacatgggtgaa
gcagtaggggtaattgcagcacaatccatcggggaaccgggtactcagcttacgttgaga
accttccaccaggggggtactgcaggaaacgtatcagaaaacccatctatcgttgcaaga
agagacggtatcgttgaaatggatgaagtaagaaccattacttctgaagatgaaaacggt
aatacagctgaggttgtagtttctcgttcaacggaattcagattagttgctgataacgat
tccagaacaccattaatggtagctaacgtaccttatggatcaatattatctgtaaaacca
ggtgataaagtgaagaaaggagatgtgatctgtagatgggatccgtataacgcggttatc
attgctgaaacttcaggtaaggtagaatacgaggatatcatccagggtatttcattccag
cttgaaattgacgaacagacaggattcgaggagaaagtaatctctgaatccagaaataag
aaagctgtacctaccttaaaagtggtagactctaagggagttgagcaaaaagcttacaac
ttaccggtaggagcccacttgatggttaatgatggtgagaaaattaaggctggtaaagtc
ttgatcaaaatcccgagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttactgaattattcgaagcaagaaacccttcaaacccagcggttgttactgaaatcgac
ggggtagtttcttacggaaaaatcaagagaggtaaccgtgaacttatcgttgaggctaaa
actggagaaagaaagatttacctggtaaaactttccaaccagattcttgtacaggagaat
gacttcgtaagagcaggttctccgctttctgacggttctattacaccggaagatatccta
agaattaaaggtccgacagccgttcaggaatacttagtaaatgaaattcaggaagtttac
cgtctacagggggtaaaaatcgatgataagcacttcgaaatcatcgtaagacagatgatg
acaaaagtatctatcgtagatggaggtgatactcagttccttgaaggagctcttgagcac
aaatatgacttcctggaagaaaacaacagggtattcggtcttaaagtagtagtagatgcc
ggtgattctaaggaattcaagccaggtcagatgattactgcaagagaattaagagacgaa
aactcgaagttgaaacgtgaagatttagcattggtagaagtaagagaagctcttcctgct
acagcaactccggtattacaaggtattacaagagcagcacttcagactaagtcattcatg
tctgcagcatcgttccaggaaacaactaaagttcttaacgaggccgcagtggctggtaaa
atagatgatctgaatggtcttaaagaaaatgtaattgtaggacacagaatccctgcaggt
acaggtcttaaagagtatcagaatgttattgtaggttctaagaaagaattcgaagacctt
aattaa
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