Chryseobacterium gallinarum: OK18_13075
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Entry
OK18_13075 CDS
T03954
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgn
Chryseobacterium gallinarum
Pathway
cgn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OK18_13075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgn03019
]
OK18_13075
03009 Ribosome biogenesis [BR:
cgn03009
]
OK18_13075
Enzymes [BR:
cgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OK18_13075
Messenger RNA biogenesis [BR:
cgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OK18_13075
Ribosome biogenesis [BR:
cgn03009
]
Prokaryotic type
rRNA helicases
OK18_13075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKK73412
UniProt:
A0A0G3M8P1
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All DBs
Position
2904286..2905971
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AA seq
561 aa
AA seq
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MNLFTETNLSPDILKAIGEMGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQIAKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSA
TKIEINERTIPTGDQIIKAQVGGVFEKLFTEHEDLFEFDDSLIPDLSNFTKEELVHQLLQ
FQLKDLALYYKDKHDLAEQKLSTRDDDYSRRDRGRDRDRGRDRDRGRDRERGGKPRRRDE
NMVRFFFNLGKKDHLKKLDVLDIINKATAGGKSKKRAEIGDIEILEKFSFFEVEKSFKDN
VLSNIQSMKFKGKDMRAEVAN
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatattcttaaggcgattggcgaaatg
ggttacgaaagcccaacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgatttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagattgctaaagacataaagaattactctaagtatatgaaagac
atcaaaactactgcggtttatggtggaagtagtattgtagagcaaatgagatctttaaag
gataagccacaaatcattgtgggaactccgggaagagtaattgatcttatcaacagaaag
gcgcttgatttttctgctattcattggttggtattagacgaggctgatgaaatgctttca
atgggtttcaaagatgaattggagaccattctaagtgaaactccggaaacgaaacaaacc
ttcttattctctgctacgatgaataaagaagtggaaaggatttccaaaaactatcttacc
aaaccacaccgtatttcagtaggttctatcaatgaagtgaaaaagaacattactcatgaa
tattatgtggtaggataccgccagaaaaaagaagcattaaagcgattaattgatgctaac
cctaaccagtattccatcatcttctgcagaacgagaatggaaacccaggaagtagctgat
ttcttaatgcagaacggctatgctgctgacgcccttcacggggatctttcccaggcgcag
agagatacggtaatgaagaagttcagattgaaaaatattgatatccttgtagcgacagac
gttgccgctagaggtctggatgtcaattctctgactcacgttatccactactccctgcct
gatgatcctgaagtattcgttcaccgaagcggaagaacaggtagagcaggaaaagatggt
atttctatggctttgatcaagcctgaagaaagcagaaaactgaagcaaatcaaatctgct
acgaaaattgagattaacgaaagaactattcctacaggtgaccagattattaaagctcag
gtaggaggagtttttgaaaagctattcacggaacatgaagatctttttgaatttgatgac
agtttaatcccggatctgagtaactttaccaaagaagaactggtacatcagttgctgcaa
ttccagttgaaagaccttgctttatattacaaagataagcatgaccttgctgagcagaaa
ttaagcaccagggatgatgattattccagaagagatcgtggtcgcgacagggacagggga
agagacagggatcgtggaagagatcgggaacgtggcggaaagccaagaagaagagatgaa
aatatggtaagattcttcttcaatcttggaaagaaagaccatttgaagaaacttgatgtt
ttagatattatcaataaagctactgccggaggaaagagtaagaaaagagctgaaatcggt
gatattgaaatcctggagaaattctccttctttgaggttgaaaaatcgtttaaagacaat
gttttaagcaatattcaatctatgaaatttaaaggaaaagacatgagggctgaagtagcc
aactaa
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