Cottoperca gobio: 115005202
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Entry
115005202 CDS
T07513
Symbol
rtcb
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cgob
Cottoperca gobio
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgob03016
]
115005202 (rtcb)
Enzymes [BR:
cgob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
115005202 (rtcb)
Transfer RNA biogenesis [BR:
cgob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115005202 (rtcb)
Prokaryotic type
tRNA splicing ligases
115005202 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
115005202
NCBI-ProteinID:
XP_029282842
Ensembl:
ENSCGOG00000018441
UniProt:
A0A6J2PCE7
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDEIQYLEKIGTNVWRIXKGFVPNMQVEGKFYVNESLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYDD
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIVVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFVTTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggagttataacgatgagatccagtatctggaaaagatcggcactaacgtctgg
aggattnaaaaaggttttgtgcccaacatgcaggttgaaggaaagttctatgtgaacgag
tctctggagaaactgatgttcgaggagcttcgtaacgcgtgtcgaggaggaggttttggg
ggattccttcccgccatgaaacagatcgggaacgtggcggcgctgcccgggatcgtacac
cggtccatcgggctcccagacgttcactctggatatgggtttgcgatcggaaacatggcc
gccttcgacatgagcgaccccgacgctgtggtgtctccaggcggcgtgggcttcgacatt
aactgcggtgtgcgtctgctgaggacgaacctggacgagggcgacgtgcagccggtgaag
gagcagctggctcagtcgctgttcgaccacatcccggtgggggtcggctccaagggggtc
atccccatgggggccaaggacctggaggaggctctggagatgggggtggattggtctctg
agggaggggtacgcctgggccgaggacaaggagcactgtgaggagtacggccggatgctg
caggccgaccccaacaaagtgtcgtctaaggccaagaagagaggcctgccgcagctcggg
actctgggagcaggaaaccattacgctgagatccaggtggtggacgagatctacgacgac
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgcgtgatgatccacagc
ggcagcagaggcctcggacatcaggtggccacagacgctctggtcgccatggagaaggcg
atgaagagagataagatcgtggtgaacgaccgtcagctggcgtgcgctcgcatcacgtcg
caggaaggacaggactacctgaagggcatggcggccgcagggaactacgcctgggtcaac
cgctcgtccatgaccttcctcacccgacaggccttcgccaaagtgttcgtcacgacgccg
gacgacctcgacatgcacgtcatctacgacgtctctcacaacatcgccaaagtggaggag
cacatggtggacgggaggcagaaaacgctgctgatccaccgcaaagggtccacgcgagcc
ttccccccccaccacccgctcatccccgtcgactaccagctcacaggtcagccggtgctg
atcggaggaacgatgggaacctgcagttacgtcctcaccggcacggaacaaggcatgacg
gagacgttcggcaccacctgccacggagcgggtcgcgcgctgtctcgagcgaagtcccgc
aggaacctggacttccaggacgttctggacaaactagccgaccagggcatcgccatccgg
gtcgcttcacccaaactggtgatggaggaggctcctgaatcgtataaaaacgtgacggac
gtcgtgaacacgtgtcacgacgctggaatcagtaagaaggcgatcaaactgcgaccgatc
gctgtgatcaaaggctga
DBGET
integrated database retrieval system
