Cottoperca gobio: 115006508
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Entry
115006508 CDS
T07513
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cgob
Cottoperca gobio
Pathway
cgob03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115006508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgob03021
]
115006508
03036 Chromosome and associated proteins [BR:
cgob03036
]
115006508
Transcription machinery [BR:
cgob03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115006508
Coactivators
SAGA/TFTC/STAGA complex
115006508
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115006508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
115006508
NCBI-ProteinID:
XP_029284657
UniProt:
A0A6J2PHQ2
LinkDB
All DBs
Position
3:28933070..28992876
Genome browser
AA seq
1011 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLAGQSNPPGKTDENGGAGSVAPANHHLGK
TLPAPVGTTTLEQQQQGRCFKPEMRQQITCNDVSLDTAVTPPALGCTPSFGEPSTASASC
VNATSGGLLSHGASITTLTASAVSTLASTPASISTTSSRGAKGSPGIGETSTEANPPRKR
INTPRRSASARIKSLNGAAVTTRRNTADTVSSVDPGATTPNSTRPGTSSINTSTFTLSNA
NLPVGQSAIALDRGTPTIALHRLPSHIVASIAQNGTSVSALVQQGSRIGPITAASQENHS
NTVTASKTDDCQSKIVMSSQSGGVNSVINSSVVTPTTTGTPAAAPAVTQPPSSATAPCAT
MVAASSACGTAQTTPVTTTVSMVRPTAPSPTPAVVACAQSQPRPGLAAPQRIVAPQLIVR
PPQQQTTIQLPPGFTIPPGMVLVRTELGQLVMVPQQALAQAQAQAQAQAQAQAQNNISPR
PATPTTGASFRVTTPQSPVTSQTTRQCPMTPAKMVPSPSPTPSSPALQTSSSSSSSSSSS
SSSSSSSCPALRPKGPVAPAVAVTAPQQTPMVMAPQAPAQAASQPVHTPQTGINANPGGP
IVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTSRLQT
ELKSSPQPYLVPFLKKSLPALRLSLLSSQHSVTHPPGFKPAPCGHPPAIAAGPAVRIRHP
NSVSVTTGASALPAGTLGHAAGMGMKTAGAVSGQVRMPVVITQSVRAQGTLGKGGIIQAG
KGPTAVQICGNQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATNSELVGTHI
RSCKDEAFLLPGLLHRRILETAKKFGVTEVPMEAVTFISHAAQSRLRTVVEKVSTIAQHR
MDSCKDDECYEQSADVRSQLRFFEQLERMEKQRKDEVEREILLKAAKSRSRQEDPEQARL
KQKAKEMQQQELATIRQRDANLTALAAIGPRKKRKMDSPGATPSGAELQSG
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctgttttcagaggtggatgaaaaagct
gtgagcgacttggtgggctcattggagtcacagcttgctggccaaagcaaccccccaggt
aaaactgacgaaaacggaggcgctggctcagtggcccccgctaaccatcacttagggaaa
acgctaccagctccggtgggcaccacaacactagaacaacaacaacaaggacggtgtttt
aaacctgagatgcgccagcagatcacctgcaacgacgttagcctggacacagctgtcacc
cccccggctctgggctgtaccccttcttttggcgagccctccaccgcttcggcttcctgt
gtgaacgccaccagcggcggcttgctatcacatggagcatccatcacaacactgactgca
tctgctgtgtcaactctggcatcgacgccagccagcatcagcaccacatccagccggggg
gccaaggggagcccggggataggtgagacgtcgacggaagccaacccaccgaggaaacgc
atcaacacgccgcggaggagcgcgtcggctcggattaagagtttgaacggcgccgctgta
acgacgaggaggaacacagcggacaccgttagctccgtggaccccggtgccactacacca
aactctacccgaccggggacatcctctatcaacacttccactttcaccctctccaacgct
aacctccctgtggggcagtcggctattgctctggaccgggggactcccaccattgctttg
cacagactcccgagtcacattgtagcgagcatagcccagaacggtaccagcgtttcggcc
ttggtccagcagggctctcgcattggacccataacagcagcttcacaggagaaccacagc
aacacagtcacagcttccaaaacagacgattgtcagtccaaaattgtaatgtcaagccag
tctggtggtgtcaactctgtaataaactcctctgttgtcacaccaacgaccacaggcacc
cccgcggcagctccagcagtcacccagcccccgagctctgccacggctccttgtgctaca
atggtggcagcaagttctgcatgtgggactgctcaaactacaccagtgaccaccactgtt
agcatggtcaggcccacagccccctctccaacacctgctgtggtcgcctgcgcacagtct
caaccccgtcctggacttgcagcccctcaaaggattgtagccccccagctgattgtcaga
ccgccccagcagcagacgactattcagctgccccctgggtttaccatcccaccggggatg
gtgttggtgcgcacagagttgggccagctcgtcatggttcctcagcaggctttggctcag
gctcaagctcaggctcaggctcaggctcaggctcaggcccagaacaacatctccccccga
cctgccacccccacaacaggagcgtccttcagagtaacaactcctcagtctcctgtgacc
tctcagaccaccaggcagtgtcccatgaccccggccaagatggtaccgtctccctctccc
actccctccagccctgccctccagacctcctcttcttcttcttcttcttcttcctcctcc
tcctcctcctcctcctcctcctgtcctgcactccgcccaaagggccccgtggcgccggcc
gtggcagtgacggctccgcagcagacccccatggttatggcccctcaggccccggcccag
gctgcctcccagccagtgcacactccgcagacgggcatcaacgcgaatcccggaggtcct
atcgtgtcccaggaaatgcaggagaatgtcaagaagtgtaagaacttcctggccacactc
atcaagctggcgtctcacaactctccgtcccctgagacgtccaagaacgtcaagtctctg
gttcaagacctgctggatgccaagattgaaccggaggagttcaccagccggctgcagacg
gagctcaagtcgtctccgcagccttacctggtgcccttcctcaagaagagcctcccggcc
ctgaggctgtctttgctgagtagtcagcactccgtgacccatcccccgggattcaaacca
gcaccctgcggccaccctcctgccatcgcggctgggccagctgtccgcatacgccaccct
aacagcgtcagcgtcactacgggtgccagcgcgctgcccgctgggactctcggacatgca
gctggcatgggtatgaagacagcaggcgctgtcagtggccaggtccggatgcccgtggtg
atcacacagtccgtcagagcgcaaggcactttggggaagggaggcatcatccaagcaggc
aaaggtcccacggctgttcagatctgtgggaaccagaaaaacaagctcaacgaccccgga
ggaggttctttcagggacgatgacgacatcaacgacgtggcctccatggccggcgtgaac
ctgaatgaagagagcgcgagaatactcgccaccaactctgaactagtgggaacgcacatc
cgctcgtgcaaagacgaggcctttctcctcccgggtctgctccatcgacgaattctggaa
acagctaagaagtttggagtcacagaggtcccaatggaggcggtgacattcatctcacac
gccgcacagtcacgacttcgaaccgtcgtagaaaaggtttcgaccatcgcacagcaccga
atggactcctgtaaggacgacgagtgctacgagcagtctgcggacgttcgctctcagctt
cgcttcttcgagcagctggagagaatggagaagcagaggaaggacgaggtggagagagag
atcctgctgaaagccgctaaaagtcgctccaggcaagaggacccagagcaagctcgactg
aaacagaaagctaaggagatgcagcaacaggaactggcgacgataaggcagcgagatgcc
aaccttacagcactagccgccatcggaccccgcaaaaaacgtaaaatggattcaccagga
gccaccccatcaggggccgagctacaaagtggatga
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