KEGG   Cottoperca gobio: 115006822
Entry
115006822         CDS       T07513                                 
Symbol
lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
cgob  Cottoperca gobio
Pathway
cgob03018  RNA degradation
cgob03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cgob00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115006822 (lsm2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115006822 (lsm2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgob03019]
    115006822 (lsm2)
   03041 Spliceosome [BR:cgob03041]
    115006822 (lsm2)
Messenger RNA biogenesis [BR:cgob03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     115006822 (lsm2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     115006822 (lsm2)
Spliceosome [BR:cgob03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    115006822 (lsm2)
 Complex C
  U2 snRNP components
    115006822 (lsm2)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 115006822
NCBI-ProteinID: XP_029285219
Ensembl: ENSCGOG00000019227
UniProt: A0A6J2PIN6
LinkDB
Position
4:5504945..5507480
AA seq 156 aa
MKLSLVPKLNVFSPPHSLTLSTSGSPTWCGSIITPCTVAAITRGVQHHQHQTHNHKTPTA
IMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKN
CFIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq 471 nt   +upstreamnt  +downstreamnt
atgaagctttctctggtaccaaagttgaacgtgttttcacctccacactcgttaacactg
agcacctctggctcccccacgtggtgcgggtcaataattacaccctgtaccgtcgcagca
ataacacgcggggtccagcatcatcaacaccagacgcacaaccacaagacaccaacagca
ataatgcttttctactcgtttttcaagtcgctggtgggaaaggatgtggtggtggagctc
aaaaacgacttgagcatctgcggaacacttcattctgttgaccagtacctgaacattaag
ctcacagacatcagcgtcactgatccagagaaatatccccacatgctgtctgtgaaaaac
tgtttcatccgtggatctgtggtccggtacgttcagctgcccgcagatgaagtggacact
cagctcctgcaagacgcagcgcgaaaagaagcaatgcagcagaagcagtga

DBGET integrated database retrieval system