Cottoperca gobio: 115008345
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Entry
115008345 CDS
T07513
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cgob
Cottoperca gobio
Pathway
cgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115008345 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115008345 (patl1)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115008345 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
115008345 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
115008345
NCBI-ProteinID:
XP_029287759
Ensembl:
ENSCGOG00000014516
UniProt:
A0A6J2PR11
LinkDB
All DBs
Position
1
Genome browser
AA seq
858 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDEGQIEEEDGIDQFNDDTFGAGAIDDDWQEEHKRLAGLDRTGLG
AGLGLGGGGMGGESDLGGAINSTHLHSSAGHLPLPSSLKFSSSSGLPLPDMEDRGGGGGL
AESLARLILEADPAIAGVGAAERPGPSSSSSGSSLSPLQGLERPRVLPQPSCIPHLTQSH
QLPHHPQHQLPPGPSISGLPPGTSPMSMLSYQQQQHMLRRGTAPMAQMNSHSIWENSMGF
GPVSVTPTLVTHMEDSPLMSIIKEVGLPKRAPQGRNDEARDLSERVPPPRSSSPVIGSPP
VRAVPIGTPPKQPMSHALNHQIHHPTAVHVRAPIQHRYPPPFPERVSPNTLLNLAVSFSS
PQLFQNSPLCCGPFPPGVGPVLSQIQRAQLLNSQVAGFPRGGPAAPLLPGGGGFRPFFGG
PPPPLGHRMGPPPPHCPPNHTPPIRHNTTHLHPQHRRMLTQRMQNRGGEHGRTGGDRRSR
DPYSNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTK
LITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRR
QILYTVEKMYSLLLEVQDFEKRFVQAPEEDREVLLEQHKSNTVQLCNSLREKEWDDRVSD
EQCVMIMSVRKGKRLISRLLPFLPSPQSAAVVMAISRNLPALAKKDKQDQVLCWLVEPVS
AVILSLSSSALTDLLQELQGNEGQLATVLHNKFGVTLLYLILSEGERMQSSDSNCQLMDD
NRWTELVFSVTRELLSVPASSLSPPLFTPPNLLSLFSRYVDRQRLEVLQDKLQISSLSSP
ILEGLNQALCNTTLSTHL
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtacgttggaggaggaagatgagggacag
atagaagaggaagatggaattgatcagttcaacgacgacacctttggagctggggccatc
gatgacgactggcaggaagaacacaaacgcctcgctgggcttgataggaccgggctagga
gcggggctggggttaggaggaggggggatgggaggagaatcagatttaggaggagccatt
aactccacccatctccattcctctgcgggccatctcccccttccatcttccctcaaattc
tcatcttcctccggactgcctctaccagatatggaggatcgaggagggggtggtggcttg
gcagagtctctggccagactcatcctggaggctgacccggccattgctggggtcggagca
gccgagagacctggtccgtcctccagctcttcaggatctagcctctcccctctgcagggc
ctggaacgacccagagtcctaccgcagccctcatgcattccacatctcactcaatcacac
cagcttccccatcacccccagcaccagctgcctcctgggccctccatctcaggccttcct
cctggcacctctcccatgtccatgctcagctaccaacagcagcagcacatgctgcgcaga
gggactgctcctatggcccagatgaactctcacagtatctgggagaacagtatgggtttt
gggccagtcagtgtgacccccacactggttacacacatggaggatagtccactaatgtct
ataatcaaggaggtgggccttcctaaacgagctcctcagggtaggaatgatgaagcacgg
gatttgtcagagagggtcccacctccacgctcttcttcccctgtgatcggctccccacca
gtgagggcagtgcctattgggaccccacccaaacagccaatgagccatgctctgaatcat
cagatccaccatcccacggcggttcatgtgagagccccgatccagcacagataccctcct
cctttccctgagcgtgtgtcacccaacaccctcctcaacttagctgtgagtttctcctcc
cctcagcttttccagaactccccgctgtgctgcggtccgttccctcccggagttggtcct
gtcctgtctcagattcaacgggcccagctgctcaactctcaggtggctggttttcctcgc
ggtggtccagcagctcctttgttaccaggcggtggtggtttcaggccgttcttcgggggc
cctcctcctccacttggtcacagaatgggcccgccgccccctcattgcccccctaaccac
acgccacccatccgacacaacaccacccacctccacccacagcaccggcgcatgctcacc
caacgcatgcagaaccggggaggggaacatggcagaactggaggggaccggcgcagcagg
gacccctacagtaatcttatgagtcagaaagagaaggaatgggtaaccaagatccagatg
atgcagctgcaaagtactgacccttacctggatgactactactatcagaactactatgaa
aagatggagaagcgtcaggaaagagagagagacagcagcaagaaggaacacaccactaaa
ctgatcactccacaggtggctaaggtcgaacatacctacagaccagttcagtttgcaggc
tctctgggtaagctgacggtctccagcgtcaacaaccctcgcaagatgattgatgccgtg
gtgacaacccgcacagacgacgaggagaaaagagagaagcaggtttggaataagaggcgg
cagatcctctacactgtggagaagatgtacagtttactgctggaggttcaagactttgaa
aaacgttttgtccaggcgccagaggaggacagggaggttcttctggagcagcataaaagc
aacactgtgcagctgtgcaactctctgagggagaaggagtgggatgacagagtgagtgat
gagcagtgtgttatgatcatgtcagtgaggaagggcaagcggctcatctccagactcctc
cccttcctgccctcaccccagtccgccgccgttgttatggcgatttcccgcaaccttcct
gccctggccaagaaggacaagcaggaccaggtgctgtgctggttagtggagccagtttct
gcagtgatcctgtcattgtccagctctgcccttacagacttgctccaggagcttcaggga
aatgagggccaactggccacagtactacacaacaagtttggtgtgacactgctgtatctg
atcctgagtgaaggagagaggatgcaaagctccgactccaactgtcaactcatggacgac
aatcgatggactgagttggtgttttcagtgaccagggagttgctcagcgtccccgcctca
tccctctctcctcccctcttcacccctcctaacttgctctccctcttctcacgctacgtc
gatcggcaaaggctggaggtgttacaggacaagctacagatctcttctttgtccagtcca
atcttagaaggcttgaaccaggcactgtgtaacacaactttaagtactcacctgtaa
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