Cottoperca gobio: 115010310
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Entry
115010310 CDS
T07513
Symbol
blm
Name
(RefSeq) Bloom syndrome protein isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03440
Homologous recombination
cgob03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115010310 (blm)
03460 Fanconi anemia pathway
115010310 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgob03032
]
115010310 (blm)
03400 DNA repair and recombination proteins [BR:
cgob03400
]
115010310 (blm)
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115010310 (blm)
DNA replication proteins [BR:
cgob03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
115010310 (blm)
DNA repair and recombination proteins [BR:
cgob03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
115010310 (blm)
Bloom's syndrome complex (BTR)
115010310 (blm)
FA (Fanconi anemia) pathway
115010310 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BLM_N
DEAD
BDHCT
Helicase_C
RecQ_Zn_bind
HRDC
RQC
DUF1178
Motif
Other DBs
NCBI-GeneID:
115010310
NCBI-ProteinID:
XP_029290722
Ensembl:
ENSCGOG00000015009
UniProt:
A0A6J2Q0B9
LinkDB
All DBs
Position
6:16100430..16109846
Genome browser
AA seq
1411 aa
AA seq
DB search
MSSLPQNNLKEQLARHSSAAQSKLSLAKPKPGAFSFKKKSSSGITKVEVSTKVISSNVLA
NSSVNVSKNSLVTKSPLIFSNKLERPQKSQINNFFPVSSKGKSDSISAAGNCAPAGQTPS
TVSALKVTTAPTKSDNQFTNGNGGISTSLDASLGFPIDDWDDFDDFETPVKAKNDSFSSE
ISGKSANPVSSFSDGKRKFSLMTPQLSNSFSNKNGLSTSEPPHMETDELEHSVDKAAVSP
GPSLNQDPAEIEFEDSPVQMTRRRFPAHLKSAISDSEEDNDDVLEPFKGMAGNKEKWIDP
KVIKLDDNSEPEDDLDYIPPSPIPDEISYTTCALKTRSKSADVESRDRPVLSKGPITTLH
EPSDHHSKDTTNEQLFSIMQSICSLVDSIPEHELIALSCGNELLLKRAQRKRIIVTSGGS
LLKMQQPDSTVISEPSFKDKSSFSCDTYSVMSSGSSVPVDSKKPPQTRRSSVISVDYDSD
SIINPKASSKNSGKIYVKDQSMCDSPSTYSLTSPAFTYSNKTSTDLDGSELFFSPKKLNT
VVQNKSNTPAASTAAEEHDDFYNDYFDIDDFNDSDIPDYFDGPPKSSTVTPTVKKGGPSM
SSWDKKPTTPAPTPKPAKICSPEPTYRNPAHDRLRGFNFPHSQEMMKIFHKRFGLHQFRF
NQLEAINAAILSEDTFVLMPTGGGKSLCYQLPACVLQGVTVVISPLKSLIVDQVQKLTTL
DIPATSLSGNISESEAGRIYMQLSRKDPIIKLLYVTPEKVSASHKLISALHNLYDRGLLG
RFVIDEAHCVSQWGHDFRPDYKKLHEMRQKFPNVPMMALTATATPRVQKDILNQLNMTRP
QVFTMSFNRTNLKYTVLPKKPKKVDEDCIVWIKKNYPRDSGIVYCLSRKDCDAMAESLQR
ARISALSYHAGLSDGDREHVQTKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSV
EGYYQESGRAGRDGEISHCILFYSYSDVHRIKRILTLDKEGDRQTKATHLNNLHCMVHFC
ENMMECRRIQLLAYFGEMKFNKSFCKDNADVSCDNCAKPNQYKMRNVSDDVKKIVSFVQE
NCEKVGARFGRTAQQIRLTLNMLVDIFVGSKSAKVQTGMFGMGGVYSRHNADRLFKKLVL
ENVLVEDFYITNGGQAVAYISAGSKAMNVLSGHMQVEFYETESASSIRKHKAAEAQDVSQ
REQKVQECLKELLDLCKQLGKAFGIHYYNIFSTATLKKISEKLSSDPEVLLQMDGVTEDK
LEKYGAEVIQVLQKYSEWQQPEEPTMTTDNGGDGWIDTAQGRTYGDDEYESSNYFHSQPA
QGQKRKKAPFFKYSKKRKAYGNTSANSKGRGYSSNKSWSSSSSRGGSKAAGRGYRGSAGD
APAGRTPGFLTVPTPQTYQRPFLKPAFSHMG
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtcttccacaaaataacttgaaggagcagctggcgaggcacagcagtgctgct
cagagcaagttgtctctggctaaacccaaaccgggggccttttctttcaaaaagaagtcc
tcatcaggtataaccaaggtggaagtctcaactaaggtaatcagctctaatgttttggca
aacagtagtgtcaatgtttctaagaacagtttggtgactaaatctcctttgatattttca
aacaagcttgagagacctcaaaaatcccaaatcaacaacttcttccctgtaagttcaaaa
ggcaagtcggactccatcagcgcagcaggcaactgtgctcctgccggccagactccttca
acagtgtctgctcttaaggtgacaacagcgccaacaaaatctgacaaccagtttactaat
ggcaatggaggcatttccacaagtctggatgcatctcttggattcccgattgatgactgg
gatgattttgatgactttgaaactcctgtcaaagcaaagaatgactcattcagttccgaa
atatcggggaagagcgccaatccagtgtcatcttttagtgacggaaaaagaaaattctct
cttatgacgccacagttgagcaacagtttttcaaacaagaatggtctttcgacaagtgaa
ccacctcatatggaaacagatgaattggagcacagtgttgacaaagctgcagtttcacca
ggacctagtttgaatcaagatccagcagaaattgaatttgaggattctccagttcaaatg
acaagaagacgttttcctgctcatctgaagtctgccatcagtgatagtgaagaggacaac
gatgatgtgcttgagccttttaaaggaatggcaggcaataaggaaaaatggattgaccca
aaggtaataaagcttgacgacaactcagagcctgaagatgatcttgattacattccccct
tctccgatccctgatgagatctcttatactacctgtgctttgaagaccagatctaaatca
gctgatgttgaaagcagagaccgtcctgtgctatcaaagggacccatcacaacactacat
gaaccctctgatcaccactctaaagacacaaccaatgagcaactcttcagtatcatgcag
tccatttgttctctggtggattccatccctgaacatgaactgatagctctgtcctgtgga
aatgagcttttgctgaagagagctcaaaggaagaggattattgtaactagtggtggcagc
ttattaaagatgcagcagccagacagcacagtgatttctgaacccagctttaaagataaa
tcttcttttagctgtgatacatatagtgttatgtcatccggcagctctgtgcccgtggac
tccaagaagcctcctcagaccaggagatcttcagttatctcagtggactatgactctgac
agtattattaacccaaaggcaagcagtaagaacagcgggaaaatatatgtgaaagatcag
agtatgtgtgactctccatcaacctacagcctcacaagtccagcttttacttactctaac
aaaacaagcacagacctggatggttcagagctcttcttctctcccaaaaagctaaacact
gttgttcagaacaagtctaataccccagcagccagtacagccgcagaagaacacgatgac
ttttacaatgactactttgacatagatgactttaatgactcggatatccctgattacttt
gacggacccccaaaatccagcaccgtgactccaacagtgaaaaaggggggaccaagcatg
tcttcatgggacaagaaaccgacgacacctgctcccacacccaagcctgcaaagatctgc
tctcctgaacccacctaccgaaacccagcccacgatcgcctcagagggttcaacttcccc
cactcacaggagatgatgaagatttttcacaagcgatttggtcttcatcaattcaggttt
aatcagctagaagcaattaatgcagcgattctgtctgaagacacgtttgttttgatgccc
acaggtgggggtaaaagcctgtgctaccagctgcctgcctgtgtgttacaaggagtcact
gtggtcatctccccactcaaatcactcattgttgaccaggtccagaaactcactacactg
gatatcccagcaacaagcctgtctggtaatatctctgagagtgaagcagggaggatttat
atgcagctctctaggaaagaccccatcattaaacttctctatgtcacccctgaaaaggtg
agtgcaagtcacaagctgatctccgccctgcacaacttgtacgatcgaggccttttgggc
cgctttgtcatcgatgaggcccattgtgtcagtcagtggggtcacgatttccgtccagac
tacaagaagttgcatgagatgcgtcagaagttccccaatgtcccgatgatggcactgaca
gctactgccaccccccgtgttcagaaagacatcctcaaccagctgaacatgactcggccg
caggtgttcaccatgagtttcaacagaacaaacctgaagtacacggtcctgcccaagaaa
cccaaaaaggttgatgaggactgcatcgtctggatcaagaagaactacccacgggactct
ggcattgtgtactgcctgtcccgtaaggactgtgatgccatggctgagagtctgcagaga
gcgcgaatatcagctctgtcgtatcacgcaggcctgagtgacggagacagagaacatgtg
cagaccaagtggatcaaccaggacggctgccaggtcatctgtgccaccatagcctttggc
atgggcattgacaagcctgacgtgcgttacgtgatccatgccagtctgcctaagtccgtg
gagggttactaccaggagtctgggagagctggcagagatggagagatctctcactgtatt
ctcttctactcctacagcgacgtccaccgcatcaagaggattctcactctggacaaagaa
ggtgacagacaaaccaaggcgactcatttaaacaacctacactgcatggtgcacttctgt
gagaacatgatggagtgccgaagaattcagctgctcgcctactttggggagatgaagttc
aacaaaagcttctgtaaggacaacgcagacgtcagctgtgacaactgcgccaaacccaac
caatacaagatgagaaatgtctctgacgacgtgaagaagatcgtgagctttgtccaggag
aactgcgagaaagttggagcaaggtttggcaggactgctcagcaaatccggctgacactg
aatatgttggtggacatctttgtagggtctaaatctgccaaggtacagacgggaatgttc
gggatgggaggagtttactcgaggcataatgctgaccgtctcttcaaaaaactggttctg
gaaaacgtcctggtggaggatttctacatcactaacggcggccaagctgtggcgtatatc
tctgctggatccaaagccatgaacgtgctgtctggacacatgcaggtggagttctatgag
acagagagtgcgtctagcatcaggaaacacaaagctgctgaggcccaggacgtgtcccag
agagagcagaaggttcaggagtgtctgaaggagctgctggatctgtgcaagcagctgggg
aaagcgtttggcattcactactacaacatcttctccactgccaccttgaaaaagatatct
gagaagctttcttctgaccccgaagtcctcctacaaatggatggcgtgactgaagacaaa
ctggagaagtatggagctgaagtcattcaggtcctacagaaatactccgagtggcagcag
cctgaggaaccgacaatgacaactgacaatggtggagacggctggatagacacggcacaa
ggccgcacttatggcgatgacgagtacgagtcctccaactacttccatagtcagcctgca
cagggacagaagagaaagaaagcgccattcttcaaatattcaaagaagagaaaagcttat
ggcaacacgagtgccaactctaaaggtcggggctacagcagcaataaatcgtggtcatcg
tccagctccagaggtggatcaaaagctgcaggccgggggtacaggggctcggcaggagat
gcaccagcaggcaggacaccgggattcctgaccgtcccgacccctcaaacctaccagcga
cccttcttaaaaccagccttttcacacatgggctag
DBGET
integrated database retrieval system
