Cottoperca gobio: 115010737
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Entry
115010737 CDS
T07513
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
cgob
Cottoperca gobio
Pathway
cgob03440
Homologous recombination
cgob03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115010737 (palb2)
03460 Fanconi anemia pathway
115010737 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgob03400
]
115010737 (palb2)
DNA repair and recombination proteins [BR:
cgob03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
115010737 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
115010737 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
115010737
NCBI-ProteinID:
XP_029291339
Ensembl:
ENSCGOG00000005711
UniProt:
A0A6J2Q0Y9
LinkDB
All DBs
Position
1:complement(2653955..2661093)
Genome browser
AA seq
1368 aa
AA seq
DB search
MIEHQNKLSMDAPAVPLPSEQDAEQCGDMYREEQLRTTLHCDDKEKLRRKLVLLQREYLK
TAERLQRAERFDAVRRHVRSRISQQDQRDPEVTSNPRLSPSSLILNATNVSATSVAQRQG
HTEGPVDSDNSRRSQVIRFLLPSDAACPESQDPSHDAARGHRSSPALRLRSRRSRLRWER
RSAEAGRSTDENSEEGREQSEQMETGSEERVKTEGTEVVNGSDELFSGTDSESPSLLLTH
WNTCGQTETGDVEGEEIRGGQEQRETETELRTEGKNEPESTALVLTCRDPVIHDEEREQN
SREQRDGRLCEDGSNTNTEQNAAEKIESEKSPDDTSEIKEETSAMVGGDDVKGVSLLDSC
TLVEGLLFPAEYYVRTTRRMTFSQSQPDMQAVILSQLSVGRQCRGRGRGRGLNRQTHNNV
RSDQHTPAGLSSPTSASAGPRLESQSADTSTELNSQRSCEISEQVSACQINTDACSSPIV
PAARPARGRRKRRGRGRGRPQTPRCSLSLDTSHPGLGPTSDNLRPTSSPVCVPSASVHSP
DTQPSSGVVGTQSSSASGHLEKVFPIFLKNSDGTNRSTQMSRSAASWRSLLLPSSPLAHT
SLLPLPSLFPLFNNLMNFDITQDFHLPDDQFASLKLHKLRQVAVDSGVEHFTSPSYNTRR
STRRFDTRYGSSDAVAPLPLPLSLTPTIINSPHLTEAKRAATQSFTEETSEGVIMETPAE
QQTASLHPDCQTQTAVTESASLVPDCAAECVDQYKERETMILNIDHPVKPQPHINFADRP
AGKVDDHAIGRSGELQIKESSVVSSEDQSVCPGVVRPLEEHGSIIHQTEDKDIIETLSFD
CPLQKTPEEPSNSCAAVQLCNDSEAPEESAPASSSPRTERFVENKCFPHRSSQLLLSPPL
ASASGPFITPHLPSSALLSSPTLPSLGLTPHPVPAALPLPSSPSAPPLTLPSAHSQSIQA
LSPPALSPSPSLPPRQPPTSPAGEIQASSEPLCTDGQSVRVEPHTCPTVSTIHPQGSGGQ
VETAEEHMMRCTHTLKAPAGGCLVDACCLAGSSGGLCVAAAGKWAVCLWSQTSASDWSLT
HTWAFNEPVINVFPVPDAAGLMCVTLGQLEISEVRMLSCSSLSQVLLCEGVVQAVVGVSR
SRVVTSSHSASGSTLQVFTLSDSGSTPSSQPLVSPGVCVGALAAVGGLTDALIGSDESGR
LFVWNLKTGQLLQRIILGDGLSHMACLRGYSYCGVLFVLLQHQLLSSLEEEAKEKEEERK
TIALFSLVAINPLSGKSVPATLLYPPKGWCGRLCEADVNSSSVVGLSQSGCVCVWELGHR
GTSRMVWAPESEGWQLARWGGEGTLVTGHHNGDVTLHRYSTSQTSLGH
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacaccaaaacaaactttccatggacgcaccggcggtgcctctgcccagtgag
caggatgcagaacaatgtggagatatgtatcgtgaggagcagctgaggactacactgcac
tgtgatgacaaggagaagcttcgtaggaagttggtactgttacaaagggagtacctcaag
acagctgagagactacagcgtgctgagcgttttgatgcagtgcggagacatgtgaggagc
aggatcagtcagcaggaccagagagacccagaggtgacatcaaacccccgtctcagccca
tcttcattgattctgaacgccaccaatgtgtcagccacaagtgtagctcagcgccaggga
cacactgaaggtccagtagattctgataactccaggaggagccaggtgatcaggttcctg
ctcccctctgatgctgcttgcccagaaagccaagatcccagccatgacgcagctagaggt
cacagatccagccccgccctgcgcctcaggtctcggcgcagccgcctgcgctgggaaagg
aggagtgctgaggcgggcaggagcaccgacgagaacagcgaggaaggacgggagcagagt
gaacagatggagactggaagtgaagagagagtcaaaacagagggaacagaggttgtgaat
ggaagtgacgagttgttttctggaacagactctgagtctccgtctctgctgcttacacac
tggaacacttgtggacaaactgaaacaggagatgttgaaggagaagagatacgaggagga
caagaacaaagggaaacagagaccgagttgagaactgaagggaaaaacgaaccagagtca
accgctttggtgctcacatgtcgggatcctgttatacacgatgaagaaagggaacagaat
agtagagagcagagggatggaaggctgtgtgaagacggcagtaatacaaacactgaacaa
aatgcagcggagaaaatagaaagtgaaaaaagtcctgatgatacatctgaaataaaagaa
gaaacaagtgcgatggttggaggcgatgatgtaaagggtgtgagtctcctggactcctgt
acactggtggaaggactacttttcccagcagagtactacgtccgaaccacaagacgtatg
actttttcacagagccagcctgacatgcaggccgtcatactctcccagctgagcgtggga
cgacaatgcaggggccggggccgcggcagaggattgaacagacaaacgcacaacaatgta
cgatccgatcaacacactccggcaggtttgtcctccccgacatctgcatctgcaggtccc
cgtctggaatctcagtctgctgacacatcgactgagctgaacagtcagcgctcctgtgag
atttcagagcaagtctcagcttgtcagatcaacacagatgcttgttcttctcctatagtc
cccgctgctcgtccagcgagaggtcggaggaagagaagaggaaggggcagagggagacct
cagaccccacgatgctctcttagtttagacacctctcatccaggcctcggaccaacgtca
gacaatctcaggcccaccagctccccagtctgcgtcccctctgcgtccgtccacagccca
gatacacagccttcatctggagttgttggaactcagtctagctctgcctctggacatctg
gagaaggtctttcccatctttctgaagaacagtgacgggaccaacagatccacgcagatg
agtagaagtgcagcaagctggcgatctctcctcctgccctcctctccacttgcccacact
tctctgcttcctctcccctctctgttccccttattcaacaacctgatgaactttgacatt
acccaagatttccatctcccggatgaccagtttgcttcgttgaagctgcacaagctgcgg
caagtcgctgtggattcaggagttgaacatttcacatctccgtcttacaacacgcgcagg
agcacccggcgctttgacacacgctacggcagcagtgacgctgtggcgcctcttccactc
ccgctcagcctcacacccacgatcataaactcaccccatctcactgaagccaaacgagct
gctacacagtcattcaccgaagagacttctgaaggtgttattatggaaacccctgcagag
cagcagactgcaagccttcacccagactgtcaaactcagaccgccgtaacagaatctgcg
tcactggttccagattgtgccgctgagtgtgtggatcagtataaagagcgagagacaatg
attctgaatattgaccaccccgtcaaaccacagcctcacatcaactttgcagacagacct
gcgggcaaagtggatgatcatgccatcgggcgctcaggtgaacttcaaataaaagagtct
tctgtcgtttcatcagaagatcaaagcgtttgtcctggtgtagtccgtcctctggaggaa
catgggtctataatccaccaaaccgaagacaaagatatcatcgagactctgtcctttgat
tgccctctacagaaaacccccgaggaaccttctaacagctgcgctgctgtgcagttatgt
aatgacagtgaagctccagaagagtctgcacccgcctcctcgagtcctcgcacagaaagg
tttgtggaaaataagtgttttccgcaccgcagctctcagctcctgttgagtcctcctctg
gcgtcagcatccggccccttcataaccccccacctgccctcctctgctctcctctccagc
cccacactaccatcactaggactcaccccccaccctgtccctgctgccctccctctgccc
tcctctccctctgccccacctctcaccctgccttccgctcatagccagtccatccaggca
ctctcccctccagctctctctcctagtccatctctccctcctcgccagccccccacctcc
cccgccggagagatccaggcttcatctgagccgttatgtacagatggtcagtcagtgagg
gtcgaacctcacacctgcccgactgtttccaccattcacccacagggctcaggtgggcag
gtggagacagctgaggagcacatgatgagatgcacacacactctgaaggccccagcagga
ggctgtctggtggatgcatgctgcctggccggctcctcaggtggtttgtgtgtcgcagca
gctggaaagtgggccgtgtgtctctggagtcagacttcagcttctgattggagcttgaca
cacacctgggccttcaatgagccagtgatcaacgtgtttcctgtcccggatgctgccggc
ctgatgtgtgtgactctgggtcagctagaaatcagtgaagtcaggatgctgtcgtgctcc
agcctctcacaggtgctgctctgtgagggcgtcgtccaggctgtcgtgggcgtgtccagg
tccagagtggtgacctcctcccactcagcatctggatccaccctgcaggtgttcacgctg
tcagacagtggcagcaccccgagctctcagcctctcgtgtctcctggtgtttgtgtcggg
gccctcgctgcagtgggaggacttaccgatgctttgatcggctccgatgaaagtggccgc
ctctttgtctggaacttaaagactggacagctgctgcagagaatcatcctgggagatggt
ttatcacacatggcctgtctcagaggatactcctactgtggagtgttatttgtcctgctg
cagcatcagttgctcagctccctggaggaagaagcaaaagagaaggaagaggaaaggaag
acgatcgccctgttctcgttggtcgccattaaccctctgagtggaaaatctgtcccggct
actctgctgtatccgcccaaaggctggtgtggcaggctgtgtgaagccgacgttaacagc
tccagcgtggtgggcctgagtcagagcggttgtgtgtgtgtgtgggagctcgggcaccgg
gggacctcgcggatggtgtgggctcccgagagcgaaggctggcagctggctcgatggggc
ggagaaggtacgctggtgactggacatcacaacggagacgtgactctacaccgctacagt
acgagtcagacgtctctcggccactaa
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integrated database retrieval system
