Cottoperca gobio: 115011605
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Entry
115011605 CDS
T07513
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cgob
Cottoperca gobio
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cgob01001
]
115011605 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgob04054
]
115011605 (ciita)
Enzymes [BR:
cgob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
115011605 (ciita)
Protein kinases [BR:
cgob01001
]
Serine/threonine kinases: Other
TAF1 family
115011605 (ciita)
Pattern recognition receptors [BR:
cgob04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
115011605 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
AAA_16
nSTAND3
LRR_8
DUF815
AAA
TsaE
AAA_22
Motif
Other DBs
NCBI-GeneID:
115011605
NCBI-ProteinID:
XP_029292595
UniProt:
A0A6J2Q4X7
LinkDB
All DBs
Position
8:14570483..14581464
Genome browser
AA seq
1212 aa
AA seq
DB search
MQEVDQDPFICPDLGALPDDLSEFLSDDYLRKFVVPDLDTDVLFDDPWLNYEDVLNTCCD
LPMSTELSSLDSHQQGQEDKTSKTNNRKKRPRAPRAQRCTDVNTPSRPKRQRAAAQPKAK
VAQTEPSVTQGTGIEPSSEETAGLSSTPPRILHFHPSIQFITIPDTPACQVVQTLSLSPP
VIRLPLPNTAATRTYILVPAASPHFKRQVPTLSPTDGAVVPVQMSSSPPGSLSDTASKVM
SPHCASPLSPSNEMSSCKESPLPQCPTVLDIPQGVKDYIQEAKAHMSQTCQDIESGLSLT
SHYVDVEVSQRETLRSGKNTNKALDKELVIMGDTDRQKSLLATSQIFERPNGDKPKRYVL
LLGNAGMGKTTLIRKLCLDWSRDCIPQFDFVFFLDGKALSLTEATYSLPTLLLNLSSFAP
PCTDPKAVYAQILATPKRVLIIFDGFCKLRDYEILLQTQEKDLITSLQKDSRAQTYTVRQ
LYSAILQRILLPGCTLLLSTRPRGTASQLLRRTDSLLEVCGFTPSDVQIYLSQYFTDPDL
RVSALGFLKNCSYLDLLCWNPGLCRLVCLVLEQCKSLEDLPRTLTGLCHQVLHLKVEKDI
RNTNSQAITQSEISVEETQTQSSSSSQVKRRNINTRTRTRSRTQRARGSKKQEKEEYDIE
VEEMKSAGLEVDRTEERELLSQLSSLAWEGVKGNSSILPTGRTISAKLKAFGHRTGLFVS
YHLRTRQVVSGGEREDREEIGTEETGEKRRNKMDTENADASDDHIVLWANPFLQSYLAGV
HLSLSRTITDRAFLQTLPFQTGQKARRRPQREELELTQRFAVGLLFHNRTELQRLHSYTE
RAFRDMVAAKQALVTKHLMGLSHGDLSPTQVLEACHYVYEASSTHGDGSRDTGSTRLVAH
LAASLPEFLTFYGVPFMPPDVFAVQNVLERGGAEGRRFCLNLEDSGIQISGLRALVGLNN
INTYRACIADVITLWEQLEQSGEEVLLQGTMSKFKIHPLKATQVCHIEHLAKLVNIHVHK
KLSDSSSQSDSILAEGVPAVKELHKLEFELGPEKGPLVLPKLWELLPGLHNLQHLDLENS
KIGDKGAENLADSLVSLGSLEILNLSQNCIADRGVRKLATVLRDLPKLHCLSLYSNMISD
EGAESLASVLPHMASLTDLDVKYNKLTDVGAQSLGASLRNCRKMKTLRMWNQCIPYGVFE
RLQQQDNRIHWQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagtggatcaggacccgtttatctgtcctgacttgggagctctaccagatgat
ttatctgaattcttgagtgatgattatctgcggaaatttgtggttcctgatctcgacaca
gatgtgctctttgacgatccatggttgaattatgaggatgtactcaacacctgctgtgat
cttcccatgtcaacagagctgtccagccttgacagccaccagcagggacaggaggacaaa
acaagcaaaacaaataacaggaaaaaaagacccagagctccccgggcacagcggtgcact
gatgtgaacacaccatctcggccaaaaaggcaaagagcagcagctcaaccaaaggcgaaa
gtggcacagactgagccgtctgtcactcaaggcacaggaatagagccgagttcagaagag
acagcgggcctctcatccactccaccaagaatccttcatttccatccctccattcagttt
atcaccatcccagacactccagcatgtcaggttgttcaaacactaagtctctctcctccg
gttatcagacttccactccccaatacagctgctacacgtacttacatattggttcctgct
gcatcaccgcacttcaaacgccaagtaccaaccctctccccgacggatggtgcagtagtg
ccagtccaaatgagttcatccccaccaggatctctgtcagacaccgctagcaaagtcatg
tctccccattgcgcgtcgcccctctcccccagcaatgagatgtcttcatgtaaggaatca
cctcttcctcagtgtcccactgtccttgacattccacagggtgtaaaggactacattcag
gaagccaaagcacacatgagtcaaacatgccaggatatagagtcagggcttagcttgacc
tctcattatgttgatgtggaagtgagccagagagaaactcttcgctctggaaaaaacaca
aacaaagccctggacaaggagctagtcatcatgggcgatacagatcggcaaaaaagcttg
ttggcgacgagtcagatcttcgaaagaccaaatggagacaaacccaagcgctacgtattg
ttacttggcaatgctggcatgggaaaaaccaccctgatcaggaaactgtgtcttgactgg
tccagagactgcatcccacagtttgactttgtcttttttttagacggcaaagcactctct
ttaacggaggcgacctacagccttccgaccctcctattaaacctctcctcctttgcccct
ccctgcaccgaccccaaggcagtgtacgctcaaatccttgccacccctaagcgtgtgctg
atcatttttgatgggttttgcaagttgcgggactatgaaatacttctccagactcaagaa
aaagatttgataacgtcattgcagaaagacagcagagcacagacatatacagtaagacag
ttatattctgccatccttcagaggatcctccttccaggctgcactctgctgctctctact
cgaccaagaggcactgccagtcagctcctccggcggacggacagccttttggaggtgtgt
ggcttcaccccctctgacgtacagatatatttgtcccagtacttcactgatcctgacctc
agagtatctgctttaggtttcttgaaaaactgcagctatctggacctcctctgctggaac
cctggactatgtcggttggtctgcttggttttagaacaatgcaagagtttggaggaccta
ccgagaactttaaccgggctctgccatcaagtgcttcatctgaaagtggaaaaggacatt
aggaacacaaactcacaggctataactcaatcagaaatatcagtagaagaaacccagaca
caaagttcaagtagttctcaagtgaagaggcgtaatataaacactcgcacccgcactcgc
tctcgcacccaaagagcaagggggtcaaaaaaacaggagaaagaagaatatgacattgaa
gtagaggaaatgaagagtgctggcttggaagtagatagaacagaggagagggagttgctg
tcccagctgagttctttggcctgggaaggagttaaaggaaactcctccatcctccccaca
ggacggacgatatctgccaaactcaaggcgttcggccacaggacagggctcttcgtctcc
taccacctaaggacgaggcaggttgtctcaggtggtgagagagaggacagagaagaaatt
ggaacagaggagactggagaaaagaggagaaataagatggacactgaaaacgctgatgcc
agtgatgaccacatcgtgttgtgggccaaccctttccttcagagttaccttgcaggggtc
catttgtctctgtcaagaaccataacagaccgcgccttcctccaaactctccctttccag
acaggccagaaggcacgtcggagacctcaaagggaggagctcgagctcactcagcgattt
gcagtcgggctcctgttccacaacaggacagagctgcagaggcttcactcatacacagag
agggccttcagagatatggtggccgccaagcaggctttagtaacaaaacacctcatgggt
ctttcccatggtgacctgagccccacccaggtcctggaggcttgtcactatgtttatgag
gcgagttccacgcatggtgatggtagcagagacactggcagcacacggttagtcgctcac
ctggcagcgagtcttccagaattcctgacattttatggagtcccatttatgccgccggac
gtgtttgctgtgcagaacgttcttgaaaggggtggagctgaaggtagaaggttctgcttg
aatctggaggattctgggatacagatttcgggactcagagctctggtggggctcaacaac
atcaacacatacagggcatgcattgctgatgtcatcaccttatgggagcagctagagcag
agcggtgaagaagtgctcctacaagggaccatgtccaaattcaagatccaccctttgaaa
gccacacaagtgtgtcatatagagcacctggcaaagctggtgaacatacatgtgcacaag
aagctgtcagacagttccagccaatcagattcaatactggctgagggagtaccagcagtc
aaagagctacacaagctggagtttgagctgggtccagagaaaggtcccctggttcttccc
aagctgtgggagctcctgccaggtctacataacctacagcacttagatctagagaacagt
aagattggggacaaaggagcagagaatttggctgattctttagtctcacttggttccctg
gagatactcaatctgtcacagaactgtatagcagaccggggggtgaggaaactggcaact
gtgctgagggatctgcccaaactgcactgtttaagtctctatagtaacatgatttctgat
gaaggggcagagagtttggcttccgtcctcccacacatggcttcgctcactgacctggac
gtgaagtataacaagctaacagatgttggagcacagagcctgggagccagtctgagaaac
tgtagaaaaatgaaaactctgcggatgtggaaccagtgtattccatatggagtgtttgag
agacttcagcagcaggacaaccggatccattggcagtag
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integrated database retrieval system
