Cottoperca gobio: 115011672
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Entry
115011672 CDS
T07513
Symbol
xab2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cgob
Cottoperca gobio
Pathway
cgob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115011672 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115011672 (xab2)
03041 Spliceosome [BR:
cgob03041
]
115011672 (xab2)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115011672 (xab2)
Spliceosome [BR:
cgob03041
]
Complex B
Other components
Prp19-related factors
115011672 (xab2)
Complex C
115011672 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
TPR_MalT
NRDE-2
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
115011672
NCBI-ProteinID:
XP_029292729
Ensembl:
ENSCGOG00000012790
UniProt:
A0A6J2Q4W8
LinkDB
All DBs
Position
8:complement(7058488..7065670)
Genome browser
AA seq
848 aa
AA seq
DB search
MASLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAAKSILNMIYERAIKELP
GSYKLWYNYLRERRKQVKGKCVTEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRSRQTFDRGLRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDEGFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDEDVDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNARQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQSLDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDNVERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTSSTVSDLAPGQMGIDDMKMLEHKAQQLAAEAEQDK
PKPKDKILFVRSDASRSELAELAKQANPDEIDIDDDEDEDDDDNQGPEEVQLEQKSVPTA
VFGGLKED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgctaaacggaaaacctgatgttatgtttgaggacgatgatctgccttatgaa
gaggagattatcaggaacccatactcggtcaagtgctggatgcgttacattgaattcaaa
cagaatgcagccaaatccatcctgaacatgatctatgagcgggctatcaaagagctgcct
ggcagttataagctgtggtacaattatctgagagagagacggaaacaagtcaaaggaaaa
tgtgtcactgaaccaggctatgaagaggtcaacaattgccatgaaagggcattggtgttc
atgcacaagatgccgcggatatggcttgattactgccagttccttgtgtctcaatccaag
atcacaagaagtcggcaaacatttgaccgagggctcagagctcttcctgttactcagcat
ccgcgtatctggcctctgtatctccgctttgtccgtaacctgcccttgcctgaaacagcc
atccgggtgtaccgtaggtaccttaagctttctccagagaatgcagaggaatacatagac
tacttgcgttcggttggacgcttggatgaagctgctttgagactagcagctgttgtcaat
gatgaaggttttgtgtccaaagagggcaagtctaactatcagctgtggcatgaactctgc
gacctgatctcccagaaccctgataaagtgacctctctgaatgtcggagccatcatccga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgctcattagctgactat
tacatcaggagtggtcactttgagaaggcccgtgatgtgtatgaggaggccatccttacg
gtggttactgtaagggatttcacacaagtctttgatagttatgcccagtttgaagagagc
atgattgcggcgaagatggagaccactgctgagatggggaaggatgaagatgaggatgta
gacatggagctcagactggcccgctttgagcagctgatagcccgacgacccctcctgttg
aacagtgttctactgcgacagaaccctcataatgtccatgagtggcacaagcgggtaaaa
ctctatgagggtaatgcacggcagatcatcaacacatacactgaggcagtgcagactgtg
gatccaatgaaggccacagggaagcctcactctctctgggtttcctttgctaaattctat
gaagaaaatgagcagctggatgatgccaggaccatttttgagaaggctaccaaggtgaac
tacaagcaggtggatgaccttgctgctgtgtggtgtgaatatggagagatggagctacgc
catgagaactatgaacaggcactgcgcatcctgaggaaagctacagccatcccatccaag
aaagccgagtactttgatgtatctgagccagtccaaaacagagtttacaagtccttgaag
gtctggtccatgctggcggacttggaggagagtctcggcacttttcagtctacaaaagca
gtgtatgatcgcatcattgacctccgcatcgccacaccacagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaggaaagctttaaggcatatgagcgcggtatt
gctctcttcaggtggccaaatgtttacgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggcaagaagctggagcgagctagagatttatttgaacaatccctggat
ggctgcccagccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggga
tatggattggcacgacatgccatggccgtctatgaaagagcaacgcaggcagtagataat
gtggagagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggagtc
acgtacaccagagcaatataccagaaagctatcgaggtccttcctgatgagcatgccagg
gacatgtgccagcgatttgctgacatggagagtaaacttggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgactgccaatttctggcag
gcatggaaagaatttgagatccgccatggaaatgaagacacgattagagaaatgctgagg
atcaaacgtagtgtccaagccacatacaacacccaggtcaactttatgacctctcagatg
atgaaggccacaaccagctccacagtctccgatcttgctccaggccaaatgggaattgat
gacatgaaaatgctggagcataaagcccagcagcttgctgcagaggctgagcaggacaaa
ccaaagcccaaggacaagattctcttcgtcaggagtgacgcctctcgcagtgagttggct
gagcttgccaaacaagccaatcctgatgagatcgacattgatgatgacgaggatgaagat
gatgatgataaccagggaccagaagaggtgcagcttgaacagaagagtgtccctacggct
gtctttggagggcttaaagaggactga
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