Cottoperca gobio: 115012048
Help
Entry
115012048 CDS
T07513
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115012048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgob03041
]
115012048
03009 Ribosome biogenesis [BR:
cgob03009
]
115012048
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115012048
Spliceosome [BR:
cgob03041
]
Complex A
U1 snRNP components
U1 related factors
115012048
Complex B
115012048
Ribosome biogenesis [BR:
cgob03009
]
Eukaryotic type
Pre-60S particles
Helicases
115012048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115012048
NCBI-ProteinID:
XP_029293329
Ensembl:
ENSCGOG00000008785
UniProt:
A0A6J2Q6A7
LinkDB
All DBs
Position
8:complement(17077243..17082875)
Genome browser
AA seq
629 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGSGGPPRFGGNRGGGGGGGGGGGGGKFGNPGERLRKKQWNMD
ELPKFEKNFYQPHPDVSRRPPQDVELYRRTKVITFKGRECPNPIAKFHEASFPSYVMDVI
TKQGWTEPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI
CLVLAPTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLI
DFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL
AEDFLKEYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVE
TKRRCDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVED
VKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINP
KLLQMAEDRGGRSRGGRGGDYRDDRRDRYSGRRDFGSFRDRDNGRGFDNGPNKAFGTNSQ
NGGYGGTNNSSGNGFSGGSYNGNGQSNFNNPTGAFGGQNFQAQPFALAKGGAQTGASHPP
FPFPQAQAQAPQQHPPPLVPYPMPPQFSQ
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagaccgcggcagagatagagacagaggctatggcggcagc
ggcggtcctcctcgctttggtggaaaccgtggtggtggaggtggaggaggaggtggtggt
ggtggcggaaagttcggcaaccccggggaacgactgaggaagaaacaatggaacatggac
gagcttcctaaatttgagaaaaacttctaccaaccgcatcccgacgtttcacggaggcct
ccgcaagatgttgaactctacagaaggaccaaagtaattacatttaagggacgagaatgc
ccaaatcctattgccaaattccacgaggccagcttcccatcttatgtgatggatgtgatc
accaaacaaggctggactgaaccaactcccatccaggctcaaggctggcctctggctctt
agtggcaaggatatggtcggcattgcacagaccggctctggcaagacactttcctatttg
ttgcctgccattgtgcacatcaaccaccagcctttcctggagcggggagatggccccatc
tgcttggtgctagccccaacacgtgagctggcacaacaggtgcaacaggtggcggcagaa
tatggcagagcctctcgtctgaagaccacctgcatctacggtggagcacccaagggaccc
cagatccgcgatctagaaagaggtgtggagatctgcatcgccactccaggaaggctcatt
gacttccttgaggcaggaaagacaaaccttcgtcggtgcacttatctcgtgctggatgag
gccgatcgaatgttggacatgggttttgagccacagattcgaaaaattgtcgaccaaatc
aggcctgaccgtcagactctaatgtggagcgctacttggccaaaagaggttcgccagctg
gcagaggactttctgaaggagtacgtccagatcaatgttggcgcgctgcagctcagtgcc
aaccacaacattctgcaaattgtggatgtctgcaatgatggagagaaggagaacaaactg
attcgcctgcttgaggaaattatgagtgagaaggagaataagaccatcatctttgtagag
acaaagaggcgttgtgatgacctcaccaggaggatgagaagggatgggtggccagctatg
ggtatccatggagataaaagccagcaagaaagagactgggttctcaatgagttcaaatat
ggaaaggctccgattctcattgctacagatgttgcctccaggggtctagatgttgaagat
gtgaaatttgtcatcaactttgactaccccaacaactctgaggactatatccaccgcatt
ggcagaacggctcgtagccaaaagacaggcacagcttacaccttcttcactccaaacaac
atgaggcaggccagcgacctcatctctgtgctccgcgaggccaaccaggcaatcaacccc
aagctcctccaaatggcggaagacagaggaggtcgttcaaggggaggcagaggtggtgat
tatagagatgaccggcgggataggtattctggaaggcgtgactttggcagttttagggac
cgggataatggtagaggttttgacaacggaccaaacaaagcttttggcaccaattcacag
aacggaggctatgggggcactaacaacagcagcggaaatggcttcagtggaggcagctat
aatggtaatggacagtccaactttaacaacccaactggggcctttggaggccagaacttc
caggcccaaccatttgcccttgctaagggaggcgcacagactggtgcgagtcatccccca
ttccccttcccccaggcacaggcacaggctccacagcagcaccctccaccgctggtgcca
taccccatgcctcctcagttctcgcagtaa
DBGET
integrated database retrieval system
