Cottoperca gobio: 115012626
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Entry
115012626 CDS
T07513
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04518
Integrin signaling
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115012626
04518 Integrin signaling
115012626
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115012626
09142 Cell motility
04820 Cytoskeleton in muscle cells
115012626
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115012626
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115012626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
115012626
NCBI-ProteinID:
XP_029294185
UniProt:
A0A6J2Q9U5
LinkDB
All DBs
Position
8:19816319..19838755
Genome browser
AA seq
1447 aa
AA seq
DB search
MFSFVDMRLALLLSAAVLLVRAQGEDDRTGGSCTLEGQVFADRDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCPNPIIPHDECCPICPDDGFQEPQVEGPKGDRGAKGERGLAGPAGRD
GNPGQPGLSGPPGPPGPPGLGGNFSPQMSGGYDDKSSGMSVPGPMGPMGSRGPPGSAGSS
GPQGFTGPPGESGEAGAAGAMGPRGPGGPPGKNGEDGESGKPGRGGERGPSGPQGARGFP
GTPGLPGIKGHRGFSGLDGSKGDNGPAGPKGEAGSAGENGTPGAMGPRGLPGERGRNGAA
GTAGARGNDGAAGAGGPPGPTGPAGPPGFPGGPGSKGDAGGQGTRGSEGPAGSRGEPGNP
GPAGPAGSSGNPGTDGVAGPKGTPGAAGVAGAPGFPGPRGPPGPQGAGGASGSKGNTGEL
GAPGAKGEAGAKGEGGVAGVQGPPGPSGEEGKRGSRGEPGGAGGRGAPGERGGPGGRGFP
GSDGPAGAKGANGERGAPGAVGAKGSTGESGRTGESGLPGAKGMTGSPGSPGADGKMGPS
GVTGQDGRSGPPGPVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPTGVLGAPGKDGDV
GAQGNSGPAGPSGERGEQGPAGPPGFQGLSGPQGAVGESGKSGEQGVPGEAGPSGPAGSR
GDRGFPGERGAPGVVGPAGARGSLGSAGNDGAKGDAGLPGSPGAQGPPGLQGMPGERGAA
GLPGLRGGRGDQGGKGADGALGKDGVRGLTGPIGLPGSAGSTGDKGEPGAAGPVGPGGAR
GGPGERGESGPPGPAGFAGPPGADGQPGGKGESGDNGGKGDSGPPGASGPTGAPGPQGPV
GNGGPKGARGAAGPPGATGFPGAAGRVGPPGPSGNAGPAGPSGPGGKEGPKGNRGETGPS
GRSGEMGAAGPPGSAGEKGGAGGDGPSGSPGISGPQGISGSRGIVGLSGQRGERGFPGLP
GPSGELGKPGPGGPSGERGPPGPMGPSGLAGAPGETGREGSAGNEGSTGRDGPAGSKGER
GESGPSGGSGAPGPSGAPGPVGPAGKNGDRGETGSAGPAGAAGPAGPRGPSGPGGLRGDK
GESGEAGERGMKGHRGFTGMQGSPGPSGSSGEQGPAGTSGPAGPRGPSGSAGSSGKDGMT
GLPGPTGPPGPRGRSGEMGPAGPPGAPGPAGAPGAPGGGFDLGFISQPQEKAPDPFRMFR
ADDANVLRDRDLEVDGTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCHADWKSGQYWID
PDQGSAQDAIQVYCNMETGETCVSPTQREVAKKNWYMSKNIKEKKHVFFGEAMTDGFQFE
YGSEGSMPGDVNIQLTFLRLMSTEASQNITYHCKNSVAYMDATAGNLKKALLLQGSNEIE
IRAEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGLE
VGPVCFL
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatgcggctggcactgctgctcagcgcagcggtgctcttggtt
agagcgcagggcgaggacgaccgcacaggcggaagctgcaccttggaaggccaggtgttt
gcggaccgggatgtgtggaagccagagccatgccagatctgtgtgtgtgacagcggaacg
gtgatgtgcgatgaggtcatctgcgaggacacaactgactgccccaaccccatcatcccc
cacgatgagtgctgcccaatctgccccgacgacggcttccaggagcctcaggttgaggga
cccaagggagaccgtggagccaagggagagaggggtcttgctggtcccgctggtagagat
ggtaatcctggccagcctggactttctgggcctcccggcccccctggaccccctggcctc
ggtggaaacttctcccctcagatgtctggtggctacgatgataaatccagtggcatgtct
gtgcctggacctatgggcccaatgggatcccgtggaccccctggatctgctggttctagt
ggacctcagggattcaccggcccccctggtgagtctggtgaggctggagctgctggtgcc
atgggtccccgtggccccggcggcccccctggaaagaacggagaagatggtgagtctggc
aaacctggtcgtggtggtgagcgcggaccttctggcccacagggagctcgtggtttccca
ggaacccctggtctgcccggcattaagggacacagaggtttcagtggtctggatggctct
aagggagacaatggccccgctggtcccaagggagaggctggatctgctggtgagaacgga
acccctggtgctatgggacctcgcggtttgcccggtgagagaggccgaaatggtgctgct
ggaactgctggagctcgtggtaatgatggtgccgctggtgctggtggacctcctggtcct
actggccccgctggacctcctggattccctggtggccctggatctaagggtgatgctgga
ggtcagggtactcgtggatccgaaggacccgctggatcccgtggtgagcccggaaacccc
ggacctgctggccccgctggatcatctggaaaccccggaactgatggagtcgctggacct
aagggaacccctggtgctgctggagttgctggagctcccggtttccccggaccccgtgga
ccccctggacctcaaggtgctggtggtgcctctggatccaagggtaacactggtgagctt
ggtgccccaggagccaagggagaggccggtgccaagggagagggtggtgttgcaggagtt
caaggacccccaggaccttctggtgaggagggaaagagaggatcaagaggagagcccggt
ggtgcaggaggccgtggagctccaggagagcgaggtggccctggcggtcgtggtttccct
ggttctgatggccctgctggagccaaaggtgccaatggtgagcgtggtgcccccggtgct
gttggagctaaaggttccactggtgaatctggccgcactggtgagtctggtttgcccgga
gctaagggtatgactggtagccctggcagccctggagctgatggcaagatgggaccttct
ggagtcactggacaagatggccgctctggaccccctggccccgttggagctagaggccag
cccggagtcatgggattccccggacccaagggagctgctggtgagggtggaaagcctggc
gagagaggagtaatgggacctactggcgttcttggtgcccctggaaaggatggtgatgtt
ggtgctcaaggcaactctggacctgctggtccttctggtgagagaggagagcagggacct
gccggaccacctggattccagggtctatcaggaccccagggtgccgttggtgagagtgga
aagtccggagagcagggtgttcccggtgaagctggaccctcaggacctgctggatctaga
ggtgacagaggattccccggtgagcgtggtgcacctggtgttgttggacccgctggtgcc
cgtggatccctcggatctgctggaaacgatggtgctaagggagatgctggattacccggt
tctcccggagcccagggtcctcctggactgcagggaatgcctggtgagcgcggtgccgct
ggccttccaggattgaggggaggaagaggtgatcaaggaggcaaaggtgctgatggagct
cttggtaaggatggtgttcgtggtttgactggaccaattggacttcctggatctgctgga
tccaccggagataagggagagcctggtgccgccggacctgtcggacctggtggagctcgc
ggaggccctggtgagcgtggagagtctggaccacctggacctgctggatttgctggacct
cctggtgctgatggacagcctggtggtaagggagagtctggagataatggtggtaaggga
gattctggtccccccggcgcttctggacccactggtgcccctggacctcagggtcctgtt
ggaaacggcggccctaagggagcccgcggagccgctggacctcctggtgctactggcttc
cctggtgctgctggcagagttggacctcccggcccctctggcaacgctggacctgccgga
ccatctggaccaggtggaaaggagggacccaaaggaaaccgtggtgagactggaccttct
ggtcgctctggtgagatgggtgctgctggacccccaggatctgctggagagaagggtggc
gctggcggtgatggtccttccggaagtcctggtatttctggacctcagggtatttctgga
tcacgtggtattgttggtctgtctggacagagaggagagagaggtttccctggcttgccc
ggaccttctggagagcttggaaagcctggaccaggtggccccagtggtgagcgtggaccc
cccggacccatgggaccctctggactggctggagcccctggtgagactggacgtgaggga
agcgccggtaacgagggatcaactggtcgtgatggacctgcagggtccaagggagagcgt
ggagagagcggcccatctggaggctctggtgcccctggaccttctggtgcccccggacct
gttggacccgctggaaagaacggtgaccgtggagagactggatctgctggccctgctggc
gctgctggccctgctggacctcgtggtccttctggacctggtggacttcgtggagacaag
ggagagagtggagaggctggagagagaggcatgaagggacacagaggattcactggcatg
cagggatctcctggaccatctggatcttctggagagcagggacccgctggtacttccgga
cccgctggacctagaggcccttctggatctgctggatcttctggtaaggatggtatgact
ggcctgcctggacccactggacctcccggacctcgtggacgttctggagagatgggacct
gctggtcctcctggagctcccggacccgctggagcacccggtgcccctggtggcggattt
gacctcggcttcatttcccagcctcaggagaaggcccctgatcccttccgcatgttccgt
gctgatgacgctaacgttctccgtgatcgcgacctggaggtggacggcaccctgaagagc
ctgagccagcagatcgagcagatccgcagccccgacggaacccgcaagaaccccgccaga
acatgccgcgacctcaagatgtgccatgccgactggaagagcggacagtactggatcgac
ccagaccagggcagcgctcaggatgccatccaggtctactgcaatatggagaccggagag
acctgcgtatctccaactcagcgtgaggtcgccaagaagaactggtacatgagcaagaac
atcaaggagaagaagcacgtcttcttcggagaggctatgaccgatggcttccagtttgag
tacggcagcgagggctctatgccaggagatgtcaacatccagttgaccttcctgcgtctc
atgtccactgaggcatcccagaacatcacctaccactgcaagaacagcgtcgcctacatg
gacgccaccgccggaaacctcaagaaggccctgctcctccagggctccaacgagatcgag
atcagagccgagggcaacagccgtttcacctacagcgtcctggaagatggatgcacgtca
cacaccggtacatggggcaagacagtcattgattacaagacatcgaaaacatctcgcctg
cccatcattgacatcgctcctatggacgttggtgctccagaccaagagtttggccttgaa
gttggacccgtctgtttcttgtaa
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