Cottoperca gobio: 115013073
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Entry
115013073 CDS
T07513
Symbol
shoc1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
cgob
Cottoperca gobio
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgob03036
]
115013073 (shoc1)
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Meiosis-specific proteins
Others
115013073 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
115013073
NCBI-ProteinID:
XP_029294907
UniProt:
A0A6J2QCA9
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Position
9:complement(19572400..19587649)
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AA seq
1478 aa
AA seq
DB search
MSESDSFITTQTFSANRFKALDYVFETTTSLKVMMNLLALPAPYFSGSRDLYPHSGELPA
GTYRTPWVRGKVISTCKLFVSGSVLHDLGEKKQPVNSPERFTVALSEVKGDLEMIPSSNP
DSVNDLDQDECVCLLKESEFNDPCQESFFKWTTDQMKPGNENKDLLLPEELMVVDYLPYF
KRHLPTLKAKLSRLRTLSVADPLLSVMGKNISEDAILRHCASYEPPPDVHTSDIQTCANI
HEEFGKESLMKEESLLLLVVVDTLKLSQENGTAFSSICGQMDVAPEQLHEQRPVLDVLHE
ASLSDVSVDISQYDVPQESGKKGNMNGGLTETAGRAMLPTEMELDVTLTPSPKTSQTQIC
PSTRELQQEEPSALSRLSLVSASAQEEMETALWKAEKHPAFVVGFLLAEPQIYEPAVDFQ
PLSEALRVVKSENQSFVCVGDKLQSQVETGAPPVYLCSSREFTESMRSEVPSSTEVKMED
FKRLSPEHVDISVRSVPMNPTNQTRFPHPKKCETAAFHTEAPADDSHLQKEESMKEMKXK
IEVSDERSLEVAAVFSARKSDINTRGDDCKTEQSAVSSRDDHGGLLVTGRPAEKDLHPLS
TFMILRSQQTATVTATPQSSTPALTMDQQKPPSEHHQPPPLQIQRSDQRPRYTSDAVSGN
ASREQKAAGQVTGQHIPQDRRDSRVVQVQATDSQLRAHCELLAFAQPCLNSARQLGLNVP
VRGDFSCLAPDQTHFLLKQQEKALCGRHAQSAEQHRDQELLFNQAAVIHVLVTFKELLLK
CDLSTALEYLTKAAEACAERSLEKLVKRLQIVLFLSHKYQESNLKLLELQQLLAAQLQSR
QGQKIAEKILVIISVDSADIRSLIISSLSHVTDASVTAVCPEEYKKKVNGASVVSSMRNS
VCVVVYEQHVGPDFPWSCFSLVVEYDHPGQSPWATVCRERSISHLSFNTTISDTKEKENA
SWCLEDHVPYVLFVSEGFLNCPLLLQTLESGFNITVLERSHCPSLQMLGGTHHYAVITVD
ERTAILIQEEDELCQDRASEGVVLRLTALSLQYNCCWLILHCRHSQGGGFSSEAFSNLVL
VYSSLVLFGMKSEDLDVKVLIVSDVMEMAKGISQICFHSLMASEKDPLSLLLRDWLTVIP
SEAEKCLLQFPCMNPLVSQLMLRRASVPWLLGASLSQLKELLPEVPHKVLKLFSDTTSLY
TLTTEQPESQTVISATNQQTCQPNSHWITTAEAEHMSSDPQPEPPISPHPRLFCSDHKSS
FLFGADHSFCEPHSMQEGNTDFRLDPSSSFGSPDVHLHLRRSWTSNDPWKEQDGGREEVR
FSGCRAGAVGRVVGRVKDEWTPKAPTGLNIDTPGVRLDSPFKLDSTFSYSPSLQQPANSE
MNTYSTVYSDLQHSDNRHCXSYGLWGRGQSTNDCLTSSRETTTISANYGSRCWRGQERKR
RGEAAGLVETALTPLKRGRLSYEKVPGRSDGQTRLKLF
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaagcgacagttttattaccactcaaaccttctctgctaacaggtttaaagct
ctcgactatgtctttgagaccaccaccagtctgaaagtgatgatgaacctgctggcactg
cccgcgccttacttcagtggcagcagagacctgtacccgcacagcggggagctgcctgca
ggcacctacaggaccccgtgggtcagaggaaaagtgatctccacctgcaaactgtttgtc
agcggctctgtgctccatgacctgggagaaaaaaagcagccagttaattcacctgaaaga
tttaccgtggctctgagcgaggtgaaaggggatttggagatgataccgagctctaatcct
gactcagtgaatgatctagaccaggatgagtgcgtttgtcttttaaaagagtcagagttc
aatgatccttgtcaggaatcatttttcaagtggacaactgaccagatgaaacctggaaat
gagaacaaagatctcctcctgccagaagagctcatggttgttgattacctgccgtacttt
aagagacatttacccacgctgaaagccaaactgtccaggctgcggacgctctctgtggcc
gaccctctgctgagcgttatgggaaaaaacatctctgaggacgccatattgagacactgc
gcgtcttatgaacccccccctgatgtgcacacctctgacattcagacgtgtgcaaacatt
cacgaggagtttggtaaagagtcactgatgaaagaagagtctctgctgctgctggttgta
gtggacacactgaagctgagccaagaaaacggcaccgcgttttcaagcatttgtggtcaa
atggacgttgctcctgaacagctgcatgagcagcgtccagtcctggatgtgcttcatgag
gcttccctttcagatgtatcggtggacatttcccagtatgacgtgccacaggagtccggc
aagaagggcaacatgaatggaggcctgacggagacggcaggacgagcgatgcttccgact
gaaatggagctggacgtgactttgacgccgagtcccaagacgagtcaaacccaaatctgt
ccgtccacacgtgaactccagcaggaagagccgtcagcgctcagcagactatctttggtg
tcagcgagcgctcaggaagagatggagacggcactttggaaggcggagaagcatccagcc
tttgtggtgggctttctgttggcagagcctcaaatatatgaaccagctgtcgacttccag
ccgctgtctgaagccttgagagtcgtgaagtctgagaatcaaagcttcgtctgcgttggt
gacaaactgcagtcccaggtggagacgggagccccgccggtgtatctgtgcagcagccgt
gagttcacagagagcatgaggtccgaggttccctccagcacggaggtgaagatggaagac
ttcaaaagactgtcacctgaacatgtggacatctcagtcagatccgtcccgatgaatcca
acaaaccaaactcggttccctcacccgaagaaatgtgaaactgctgcttttcacactgaa
gctcctgcggacgactcacaccttcaaaaagaggagtcgatgaaggaaatgaaanngaag
attgaagtttcagatgagaggtcgttagaagttgcagccgtgttttccgctcgtaagtca
gacatcaacacaagaggagacgactgtaagacggagcagagcgctgtgtcctccagagac
gatcacgggggtctgctggttacgggacgtccagcagagaaggacctccaccctctgtcc
accttcatgattctgagatctcagcagacggctacggtgactgcaacacctcagagctca
actccagcactaacgatggaccaacaaaaacctccatctgagcaccatcagcctcctcca
ctgcagatacaaagatcagatcagaggccgaggtatacgagtgatgctgtgtcaggaaat
gctagcagagagcagaaagcagctggtcaggtgacgggtcaacacatccctcaggacaga
cgggacagcagagtagtacaggtccaagctaccgacagtcagctgcgtgcccactgtgag
ctgctggccttcgctcagccttgtttaaactcagccagacagctggggctcaacgtcccg
gtgcgaggagacttcagctgcctggccccggaccaaacacacttcctcctcaaacagcag
gagaaggcgctctgcgggagacatgcacagagtgcagagcagcacagagatcaggaacta
cttttcaaccaggcggctgtgattcatgtgttggtgacgttcaaggagctgctgctgaag
tgtgacctcagtactgcattggagtacctgaccaaagcagctgaggcgtgcgcagagcgg
agtctggagaagctggtgaagaggctgcagatcgtcctcttcctcagtcacaagtaccag
gagtccaacctcaaactgctggagctgcagcagctgctggctgcacagctgcagagcaga
caaggacagaagatagcagagaaaattcttgtcataatatcagtcgactctgccgacatc
agatctttaatcatcagcagtttgagccacgtgactgatgcttccgttactgcagtttgt
cccgaggagtacaagaaaaaagtgaatggtgccagtgtggtgagcagcatgcgcaacagt
gtgtgtgtggtggtgtatgagcagcacgtcgggccggacttcccctggagctgcttctct
ctggtggtggagtacgaccatccaggccagtcaccgtgggcaacagtctgcagagagagg
agcatcagtcacctgagcttcaacacaaccatctccgacacgaaggagaaggagaacgcc
tcgtggtgcctggaggaccatgtgccatacgtgttgtttgtctcagaggggtttctcaac
tgtccgctgctgctacagacactcgagtcagggtttaatataactgtgctggagaggagc
cactgtccctccctgcagatgctcggagggacccatcactacgctgtcatcacagtggat
gaaagaaccgctatcctcattcaggaggaggacgagctgtgtcaggatcgagccagtgag
ggcgtagtgttgaggctgaccgccctctctctgcaatacaactgctgttggctcatcctg
cactgcagacacagccagggaggagggttttccagtgaagccttcagcaacttggtgttg
gtttattcgtctctggtcctgtttggcatgaagtctgaggatctggacgtaaaggtgctt
attgtgtctgacgtgatggaaatggccaaaggaatcagccagatctgcttccacagcctg
atggccagtgagaaggatcctctcagcctcctgctcagagactggctgactgtgattcct
tcagaggctgaaaagtgtctgttgcagttcccatgtatgaaccctctggttagtcagcta
atgctgaggagagcatccgtcccgtggctcctgggggcctctctgtctcagctgaaggag
ctgctccctgaggtcccacataaagtcctcaagctgttcagtgacaccacctccctgtac
acactgaccacagagcagccagagtctcagacagtcatctcggcgacaaaccaacaaacc
tgccagccaaacagccactggatcaccactgctgaagccgagcacatgagctctgacccg
cagccagaaccccccatcagcccccatcccagactattctgtagtgaccacaaaagcagc
ttcctgttcggagctgatcacagcttctgtgaaccacactcaatgcaggagggcaacaca
gatttcagactcgacccgagttcttcttttggcagcccagatgttcacctccacctccgg
aggagctggaccagcaatgatccgtggaaagagcaggacggaggcagagaggaggtgagg
ttctctggctgcagagctggagcagtggggagagttgttggacgagtaaaggacgagtgg
acaccgaaggctccaacaggcctcaacatcgacactcccggcgtccgactcgacagtcct
ttcaagctggactccacattcagttacagccccagcctgcagcagcccgctaacagtgag
atgaacacgtactcgacagtctacagtgacctccagcattcagataaccggcactgtnnt
tcctacggtctgtggggtcgaggtcaaagcaccaacgactgcctcaccagtagtagagag
acgacgacgatttcagccaactatggctccagatgctggaggggacaagagaggaagagg
aggggcgaggctgctggtttggttgaaacagcgttgacaccactgaagagggggaggtta
agctatgagaaggttcccggcagaagtgatggacagacgaggcttaaattattttag
DBGET
integrated database retrieval system
