Cottoperca gobio: 115014778
Help
Entry
115014778 CDS
T07513
Symbol
taf5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cgob
Cottoperca gobio
Pathway
cgob03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115014778 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgob03021
]
115014778 (taf5)
03036 Chromosome and associated proteins [BR:
cgob03036
]
115014778 (taf5)
Transcription machinery [BR:
cgob03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115014778 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
115014778 (taf5)
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115014778 (taf5)
STAGA complex
115014778 (taf5)
TFTC complex
115014778 (taf5)
SAGA complex
115014778 (taf5)
SLIK complex
115014778 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_VPS8
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_HPS5
WD40_RFWD3
Tricorn_2nd
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_WDR19_1st
LisH_PAC1
PROPPIN
CDK5RAP3
LisH_TPL
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
115014778
NCBI-ProteinID:
XP_029297697
Ensembl:
ENSCGOG00000008661
UniProt:
A0A6J2QK36
LinkDB
All DBs
Position
1:18256669..18263334
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQGGQVDAVEEKDIKTEPSNDGCGNNNANDGRLLSTSPGSSSSTGSNKSTAGAPEDQ
QTLLAVLQFLRKNKLSESVEILRREAGLPEDSLDLKGGDSSGAGSGGAAGSVDLEGGDAS
SLLSRVTSSSSAVAQAPTKAAGEDQPDVNVVLSAYSQQGDPPLYQVYYSGLKRFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYADDLRVLSSLSKREH
MRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKG
QIDTMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDE
KTASELKVLYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
THFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADITSTRFHPNSNYVATGSSDRT
IRLWDVLSGNCVRIFTGHKGPIHALAFSPNGKFLASGATDSRVLLWDIGHGLMIGELKGH
TDTVYSLRFSRDGEILASGSMDNTVRLWNATKAFDDLETDDFTAATGHVHLQDNSQELLL
GTYMSKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtcaggtcgacgcggttgaagaaaaagacataaaaacagaa
ccatcaaacgatggctgtggaaataataatgcaaacgacggaagactgctctctacgtcc
cccggctccagttcttcgactggaagtaataaatcgacggcgggagctccggaggaccag
cagacgctgctggcggtcctgcaattcctccgaaagaacaaactgagcgagtccgtcgaa
attttgcgtcgtgaagcgggattaccagaggattcgttggatctgaaggggggggattcc
tctggggcaggttcgggtggtgctgcaggcagtgtggaccttgaaggcggggatgcgagc
tctcttctcagccgggtgaccagctcatcctccgctgtagctcaggcgccaactaaagct
gctggggaggatcagccagatgtgaacgtggtgctgtcagcttacagccagcagggagac
ccgccgctgtaccaggtttactacagcggcctgaagaggttcatagaatcggttttggac
tgtcaccgagccgagctgtcccaggtcttctacccgctgtttgtgcacatgtatctggaa
ctggtgtacaacaatcacgagagtgaggccaaggcgttctttgaaaagttcagtggggat
caagagtgttactacgcagacgacttgcgtgttttgtccagcctgtccaagagggagcac
atgagaggcaacgagacgctgctggactttcgcaccagcaagttcgtcctgcgtatctcc
cgtgactcttaccagctgctgaagaggcacctgcaggagcgccagaacaaccagatctgg
aatatcatacaagagcacctctacattgacattttcgatggcatgccacgtagcaagggc
cagatcgataccatgtctggcagcttggcaggagagggcaagcgggaggccaataaggct
aaggtgtactatggactgttgaaggaaccagaaattgagctgcctcttgatgacgaggat
gaggaggcagagaatgaggagggcaaacccaagaagaagaaacctaaaaaggacagcatg
ggctccaagagcaagaagcaggatcctaatgcaccttcgcagacgaggatacctcttcca
gaactaaaggattcagacaagctggacaagatcatgtacatgaaggaagccacgaagagg
atccgcctgggaccagataacctgccctccatctgcttctactctttcctcaatgcttac
cagggtctgactgcagtggacttcacagacgactccagcctgatcgcaggaggcttcgcc
gactccacagtacgggtgtggagcgtcacgccgaagaagctccgcaaagtcaagtccgca
gcagacttgaatctgatcgacaaagagtcggacgacgtgctggagaggatcatggatgag
aagacggccagtgagttaaaggttctctacggacacagtggcccggtgtacggcatcagc
ttcagcccagacagaaactacttgttgtcaagttctgaagacggtacagtccggctgtgg
agtctccaaacattcacttgtctggtgggctacaaaggccacaactacccagtgtgggac
acacacttttccccccacgggtactattttatctccgggggacatgacagagttgcccgt
ctgtgggcgacggatcactaccagcctcttcggatgttttctggtcacctagcagatatc
actagcacccgcttccaccccaactccaattatgtggccacggggtcttctgatcgcacc
atccggctctgggacgtcctgagcggaaactgtgtccgcatcttcaccggtcacaagggt
cccatccatgcactggctttctctcccaatgggaagttcttggcttcaggagccactgac
agcagagttcttctgtgggacatcggtcatgggctgatgattggagagcttaaaggccac
acagataccgtctactccctccggttcagcagagacggagagatccttgcctccggctct
atggacaacacggttcgtctgtggaatgctacgaaagcatttgatgatttagagaccgat
gatttcacagccgctacaggacacgtccatctacaagataactcccaggagcttctgctg
ggaacctacatgtctaaatccacacccgtcatacacctccacttcacccgaaggaacctg
ctgctggccgctggggcctacaatccatga
DBGET
integrated database retrieval system
