Cottoperca gobio: 115015447
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Entry
115015447 CDS
T07513
Symbol
skiv2l
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115015447 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115015447 (skiv2l)
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115015447 (skiv2l)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115015447 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
115015447 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
115015447
NCBI-ProteinID:
XP_029298637
Ensembl:
ENSCGOG00000005492
UniProt:
A0A6J2QMV9
LinkDB
All DBs
Position
11:9754355..9769077
Genome browser
AA seq
1246 aa
AA seq
DB search
MDRINVPPAGPMDLPLSVLEMGCSGRFELITHPLPDQPLPPQSTLPHGLPPTSLSLDKEV
EKQFLQDAAWLPIHDADFAFQKFIKVTQREVNVDSLINCTSSALHSGVSVVRDPTTGMLL
DFTEVLLENTSLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEVLTLDQIKKKSELE
EDIDFENDLLRVPPGLKTGMDFTDKDTKITKAEVNLMSLLSTLDDVTDLQPEAEEKEEGK
GSEEAPKLPRTNSLEYLGVKDVVSSSFPPEKGTDEKSKAKENPEENKKWAIPVNITSPCD
DFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKKH
IYVISTMKRPVPLEHNLYTGNSTKTQKEMFLLVDATGNFLTKGYYAAVDAKKERTSKHAQ
SFGAKSISHNTSASQDRSVWLTLLHFLSQRHQTPVVAFTFSRTRCDDNARSLDSMDMTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILVMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGS
VIILCKAGVHEMGDLHVMMLGKPTTLQSQFRLTYTMILNLLRVEALRVTDMMKRSFSECH
RDTQAHEKRISQLKKTVSSLPPLDTEGQLSDMLPYYHTVTELRTTTEALQRAILESVNGL
KALSVGRVVLVNNKQHLNALGVILQVSSDSVNRTFTALVICEKGNEGEEGKGNDNNAFPH
LYNTTLFVPEGPCSHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQPRFRLDPPGQA
ISTATQELLRLAEANPSGIAALDPVNDLQLKSIDVVEDSMRLRVLRDSLREFNCIHSPTF
AEQFTRVKERMSVQEELDRLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLIFTQKTQVEPHITNTLQEGIDRVLS
VAKRIGELQRECDIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgttccccccgcgggccccatggacctgccgctgtccgtgctggag
atgggatgctctggcaggtttgagctcatcacacaccccttacctgaccagcctttacct
ccacagagcacgctccctcatgggcttcctcccaccagcctgagcctggacaaagaagta
gagaaacagtttttacaggacgctgcctggcttcctattcatgacgcagactttgcgttc
cagaagtttatcaaggtgactcagagagaagttaacgtcgactctctaatcaactgcact
tcgtctgcgcttcactctggtgtctctgttgtcagagatccaaccacagggatgctgctg
gacttcacagaggtgttactggagaacactagtctgtcagcaaagaactcactttcatta
caacgccaacccgggcctccttcagagagccttcgaggaagcaacaccaactaccctttc
ctccccggaggaatggaggtgcttactttagaccaaatcaagaagaaatctgagctggag
gaggacatagactttgagaatgatttgctcagagtcccacctggacttaaaacagggatg
gacttcactgacaaagataccaagatcacaaaggcagaagtcaacctcatgtccctcctg
tccactttggatgacgtcactgacttgcaacctgaggcagaggagaaagaggaaggcaaa
ggaagtgaggaagctccgaaactacccagaacaaacagccttgaatacctgggcgtcaag
gatgttgtgtcatcctcatttcccccagagaaaggaacagatgagaaatcaaaggcaaaa
gagaacccggaggaaaataagaaatgggccatccctgtcaacatcacgtcaccctgcgat
gatttctataaacgcatccccaacccagctttcaagtggccgtttgagctggatgtcttc
cagaaacaggctgtgctgaggctggaggcccatgactctgtctttgtagccgcacacaca
tcagctggcaaaacagtggtggctgaatacgccatcgctctctcacagaaacacatgaca
aggaccatctacacctctcccatcaaagccctgtccaatcagaagttcagagactttaaa
aacacctttggagatgtcggactcctgacgggcgacgtccaactcagtcctgaatcttca
tgtctcatcatgaccactgagatcctccggtccatgctttacaacggctcagaggtcatc
agagacttggagtgggtgatctttgacgaggttcactacatcaacgatgcagagagaggg
gttgtgtgggaggaggttttgattatgcttcccgatcacgtcagtatcattctcctcagc
gccacagtgccaaacgctctggagtttagcgagtggatcggtcgtataaagaagaagcat
atttacgtgatcagcacaatgaagagacctgtgcctttggagcataatctgtacactgga
aacagcaccaagactcagaaagagatgttcctgctggtggatgcgacaggaaacttcctc
actaaagggtattacgcagctgtcgatgccaagaaggagcgcaccagcaaacatgcccaa
tcgtttggcgcgaaaagtatttctcacaacacctccgctagtcaggatcgttcggtgtgg
ctcactctcctgcacttcctgtcccagcggcaccagaccccggtagttgcgttcaccttc
tctcggacgcggtgtgacgacaacgcccgctctctggactccatggacatgaccacctcc
atagagaaggccgaaatccactctttcttccagaagagtctgagtcgcctccgaggtgga
gaccgacagctgcctcagatcttggtcatgagggacctgctgaagaggggaatcgcggtg
catcacagcgggatcctgccgatactgaaggaggtcattgagatgcttttctcacgaggt
ctcgtaaaggtgctgtttgccaccgagacgtttgcaatgggagtgaacatgcctgccagg
actgtggtgttcgacagcatcaggaaacacgacgggacgggcttcagaaatctgctgcca
ggtgagtatattcagatggcgggcagagcaggccgcagaggtctggacgccacaggcagc
gtcatcattctgtgcaaagctggagttcacgagatgggagatctgcatgtcatgatgctg
gggaaaccgaccaccctccagtctcagttcagactgacctacacgatgatcctcaacctg
ctgcgagtcgaagccctccgcgtgaccgacatgatgaagaggagcttttcagaatgccac
agggacactcaggcccatgagaagaggatcagccagctgaagaagacagtgtcctctctg
cctcctctggacacagagggccagctgtccgacatgttgccttactaccacaccgtgacg
gagctacggaccaccactgaggccctgcagcgtgctattctggagtcggtcaacgggctg
aaagctttgtctgtgggtcgagttgtgttggtgaacaacaagcagcatctcaacgctctg
ggagttattctacaggtgtccagtgactctgtgaatcgcaccttcacagctctcgtcatc
tgtgagaagggcaacgagggagaggagggaaaaggaaacgacaacaacgctttccctcac
ctctacaacacaactctcttcgtacccgaaggcccttgcagccacacggtgcagaagtta
aagcttcaggacgtctcagccatcacagtgaaaaccctcaaagtgattccagacaggatc
attgacaactacaacaagaggcaacagccacgattcaggctcgaccctcccggccaagcc
atctccacggccacccaggagcttctgcgattggccgaggccaaccccagcggcatagcg
gccctcgaccccgttaacgacctccagttgaagagcattgatgtggtggaggactccatg
aggctccgtgtgctacgagacagcctcagagagttcaactgcatccactcaccaacattc
gcagagcagtttactcgggttaaggagaggatgagtgtgcaggaggagctggacaggctg
ctgttcctggtttcggaccagtctctgtctctgctgcctgaataccaccagaggatcaag
gtgctgcagtccctccagtacgtcgacagcagcggggcggtgcagctgaaaggccgcgtg
gcctgtcagatcagcagccacgagctgctgctgaccgagctgctgttcgagaacgtcctg
agcccgctggcgcccgaggagagcgccgccctgctgtcctgtttgatattcacacagaag
acacaggtggagccgcacatcaccaacacactgcaggagggcatcgatcgggtgctgtca
gtggccaagcgtattggagagctgcagagggaatgtgatataccacagacagctgaggag
tttgttggccagttcaagtttggcctgactgaggtggtgtattgctgggccagaggcatg
ccgttcgcagagatcgcccagctgaccgacgtccaggagggcacggtggtccggtgcatc
cagcgcctggacgaggtgctgaaggaggtgcgacaggccgcccgcatcgtgggagactcc
gttctggggagcaaaatggagaaggcctctctggccatccgcagggacatcgtcttcacc
gcctccctctacacccactga
DBGET
integrated database retrieval system
