Cottoperca gobio: 115015501
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Entry
115015501 CDS
T07513
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115015501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115015501
03036 Chromosome and associated proteins [BR:
cgob03036
]
115015501
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115015501
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115015501
mRNA degradation factors
5'-3' decay
Decapping complex
115015501
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115015501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
115015501
NCBI-ProteinID:
XP_029298732
Ensembl:
ENSCGOG00000019756
UniProt:
A0A6J2QN53
LinkDB
All DBs
Position
11:16930030..16940701
Genome browser
AA seq
488 aa
AA seq
DB search
MATARTENVGPVIMGLNKQNGQLRGQTKPASVQPAPTMSKALGAHQIVGGAAQDGGGIKF
GDDWKKSLKLPPKDTRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQIS
KHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPSSIDKSLYVAEFHTSGADCDVEEIEEK
PGRQQDGT
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgccagaacagaaaacgttggcccagtcatcatgggactgaacaagcagaat
gggcagctcagaggacagaccaaaccagcttcagtccagccagcacccacaatgtcaaag
gctttgggtgcacaccagatagtgggcggtgccgctcaggatggaggaggcatcaagttt
ggagatgactggaaaaagagcctaaagctccctcccaaagacaccagggtcaaaacctca
gatgtgacgtccactaaggggaatgaatttgaagattactgtctcaaaagagaacttctg
atgggcatctttgagatgggctgggagaaaccttcccctatccaggaggagagcattccc
atcgccctgtctggacgggatattttggctcgtgctaagaatggaacagggaaaagtgga
gcctatctcatcccactgctggagagaatagacctgaaaaaggaccacatacaggcactt
gtcatggtgcccacccgggagctggcactacaggtgagccagatctccatccagatcagc
aaacacctggggggagtcaaagtcatggccaccaccgggggcaccaacctgcgagatgac
atcatgcgtctggatgagaccgtgcatgtggtcattgccacgcctggtaggatcctggac
ttgataaagaagggagtggcaaaggtggatagagtccagatgatggtgatggatgaggcg
gataagctgctgtctcaggactttgtggtgcttatcgaggatatcatcagcttcctggcc
aagaacaggcagatcctgctctactctgcaacgttccccatcagcgtgcagaagttcatg
gccaagcaccttcagaaaccctatgagataaacctgatggaggagctgactctgaagggc
attactcaatactacgcctacgtcacggagaggcagaaagttcactgcctcaacacactg
ttctccaggcttcagatcaaccagtcgatcatcttctgtaactccactcagagggtggag
ctcttggccaagaagatcactcagctgggctactcctgcttctacatccatgccaagatg
atgcaggaatacagaaaccgtgtgttccatgacttcaggaatggactgtgcagaaacctt
gtctgcacagatctctttaccaggggtattgacatccaggctgtcaatgtagtcatcaac
ttcgacttccccaagaatgctgagacgtatctccatcgtattggaagatcagggaggttt
ggtcacctgggcttggcaatcaacctgatcacatcagaggaccgcttcaacctgaagtcc
atcgaagaccagctggtgaccgacatcaagcccattcccagcagcatcgacaagagcctc
tatgtggccgagtttcatacgtccggcgctgactgtgacgtggaggagattgaggagaaa
ccaggacgccaacaggacggcacttaa
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