Cottoperca gobio: 115015524
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Entry
115015524 CDS
T07513
Symbol
col11a2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115015524 (col11a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115015524 (col11a2)
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115015524 (col11a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
115015524
NCBI-ProteinID:
XP_029298780
UniProt:
A0A6J2QN62
LinkDB
All DBs
Position
11:14648008..14713458
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AA seq
1786 aa
AA seq
DB search
MKGAGSTRPANYCNTMDTGDCPFRKKRRPWRMDFSSFALVTVALVVCQTTVVRADPVDVL
RALQVPSLPEGVKKVPGFCTSRRSGTPDHAYRITKKAQISAPTKQLFSGRFPENFSIMAL
VKAQAGLQAFLLSIYSEQGIQQLGIEMGRSPVFLYEDQNGKPAPEDYPLFRGVNLADGKW
HRIAISVSKKNVTLLLDCKKKMTRALPRGNNAEVDTNGITVFGARLLDEEVFQGDIQQLL
IASNPQAAYDYCEHYSPDCDSPLPKTQAQDPNTYDVDTEYSEAGHTPTETDYYYEETVPE
GEVNGQEEIAVQPQVETTLVGEELDATKAGGVVEEAFTEEYVTGDVGLKEYDYSYRDYNE
PILETGEVDANMGPALSAVTDEGGAAVRVQKGEKGDPAVLEPGMLIEGPPGHEGPAGPSG
PPGSSGPPGSVGDPGERGPSGKAGLPGADGISGPPGTSVMLPFRFGQSGGDKGPSVSAQE
AQAAAILSQARMALKGPPGPMGFTGRPGPLGNPGSNGLKGEGGDPGPQGSRGPQGTMGPL
GKSGRRGRAGADGARGMPGESGSKGDRGFDGLPGLPGEKGHRGDSGALGPLGSQGEDGER
GDDGDIGPRGLPGEPGPRGLLGPKGPPGISGPPGVRGNDGPHGPKGNLGPQGEPGPPGQQ
GTPGTQGMAGPQGALGPPGEKGPTGKPGLPGMPGADGPPGHPGKEGPSGTKGNQGPNGPQ
GSIGYPGPRGIKGGQGIRGLKGHRGEKGEDGFPGIKGDFGAKGERGELGVSGPRGEDGPE
GPKGRVGPPGELGPLGLVGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGTNGEKGTRGLG
GKSGPRGQRGPTGPRGQRGPRGSTGKAGAKGTSGSDGPPGPLGERGLPGPQGANGFPGPK
GPPGPPGKDGLPGHPGQRGEVGFQGKMGPSGPPGVVGPQGSSGETGPMGERGHPGPPGPP
GEQGLSGPSGKEGTKGDPGPSGGPGKDGPPGLRGFPGERGLPGTPGGGGLKGSEGPAGPP
GPAGSPGERGQAGTAGPVGPPGRPGPQGPPGNAGEKGVPGEKGPIGPAGRDGVQGPVGLP
GPAGSPGVPGEDGDKGEVGEHGQKGGKGGKGEHGPPGPPGPMGPVGQPGPAGADGELGPR
GQQGPFGAKGDEGTRGFPGAPGPIGLQGLPGPPGEKGETGDVGPLGPPGPPGPRGPAGPS
GADGPQGPSGGLGNPGAIGEKGEPGEGGPPGIVGESGKKGPRGERGEKGEGGQPGTAGPA
GGRGRPGDDGPKGNPGPVGFPGDPGPTGELGPRGQDGAKGERGEDGESGESGSPGPPGEN
GPPGPLGKRGPAGTKGPEGRHGEKGTKGDSGAVGPPGKTGPVGLQGQPGKPGTEGLRGLP
GSVGEQGTPGLAGQKGPPGPLGPPGLPGLRGDPGGKGEKGHPGLIGLIGPPGEQGEKGDR
GLPGPHGSFGSKGENGMAGGTGPLGPAGPPGLPGPQGIKGAKGSSGGSGPKGEKGVQGPA
GLPGPPGEVIQPLPIQRSPKSKRSIDASQMLPENNSDMPASDATGTEFLIGSEGMEEIFG
SLNSLRQEIETMRFPLGTQDSPARTCQDLHLSQPDLKDGEYWIDPNQGCSRDSFKVFCNF
TSGAETCLYPSKSINTVKMSSWDKETPGSWYSEFTTGSKFSYVDSTGEPVGVVQLGFLRL
LSVQARQNLTYHCHRSVAWADRSAKNNYNRALHLQGANDERLSYETNPYIKALVDGCSYR
KGFDRTVLEINTPQVEHLPLLDIKVSDFGESNQQFGFEVGPVCFQG
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggggcgggctcaaccaggccggcaaactactgcaacactatggatactggagat
tgtcccttccggaagaaacggagaccttggcgcatggacttctcatccttcgccttggta
acggtggcgctcgtcgtgtgccaaacgaccgtggttcgggcagacccagtggatgtgttg
cgggctctgcaggttccctctctccccgagggcgtgaagaaagtccccggcttctgcacg
tcccgtcgctccggcacacccgaccatgcttaccgtatcaccaagaaggcccagatctct
gcccccaccaagcagctcttctcaggtcgattcccagagaacttctccatcatggctctg
gttaaggcccaggctggtctccaggccttcctcctctccatctacagcgagcagggcatc
cagcagctgggcattgaaatgggacgctcacctgttttcctgtacgaggaccagaacggc
aagccagcccctgaggactacccactgttcagaggcgtcaacctggctgatggcaagtgg
catcgcatcgctatctccgtttcgaagaaaaatgtgacgctgctgttggactgcaagaag
aagatgacccgcgccctgccccgtggcaacaatgcagaggtcgacaccaatggcatcaca
gtgttcggagcccgtctgcttgatgaggaggttttccagggagacatccagcaactgctg
attgcctccaacccccaggcagcctatgactactgtgaacactacagccctgactgtgac
tccccactgcccaagacccaggctcaggaccccaacacatacgatgtagatacggaatat
tccgaggctggccacacccctacagagactgattattactatgaggagacggtgccagag
ggtgaggtgaatggacaagaagagatcgctgtacagccccaggtggagactacgttggtg
ggagaggagttagatgccaccaaggcaggcggtgtggtcgaagaggccttcactgaggag
tatgtgactggggacgtgggccttaaggaatacgactattcctacagggactacaatgag
ccaatactggagactggagaggtcgatgccaacatgggccccgccctgtccgctgtgaca
gacgagggaggcgccgccgtcagagtccaaaaaggagagaaaggagaccctgccgtcttg
gagcctggtatgctaattgaaggacctccaggacatgagggacctgctggtccttctggc
ccccccggctcttctggacctcctggctctgtcggtgaccctggtgagaggggcccctct
ggtaaggccggtctgcctggagctgacggaatctctggacctcctggaacctcagtcatg
ctgcccttccgtttcggtcagagtggaggagataagggtccatctgtttctgcacaggaa
gcccaggcagcagccatcttgtctcaagccaggatggctctgaaaggacctcctggacca
atgggattcactggtcgtcctggacctctgggaaatccaggaagtaatggtctgaaggga
gagggtggagaccccggccctcagggctccaggggaccccagggtacgatgggacctcta
ggcaaatcaggcagaagaggccgtgctggagctgatggtgccaggggaatgccaggagag
tccggatctaagggagaccgtggttttgatggccttcctggtttgcccggtgagaaagga
cacaggggtgactcaggagcattgggacccctaggatctcagggagaggacggagagagg
ggagacgacggagacattggacccaggggactcccaggtgaaccaggacctcgtggtttg
cttggacccaaaggtcctcctggaatatctggacctcctggtgtacgaggaaatgacggg
ccacacggtcccaagggaaatttgggtccccaaggagagcctggacctccaggtcagcag
ggaaccccaggaactcagggaatggcaggacctcagggagccctcggacccccaggagag
aaaggtcccacaggaaaaccaggtctgccaggaatgcctggagccgacggcccacctggt
cacccaggaaaggaggggccttctggcaccaaaggaaaccagggtcccaacggtccccag
ggatctatcggctatcccggccctcgtggcatcaagggaggtcaagggatccgtggactg
aagggccacagaggagagaagggagaagatggtttccctggaattaagggagactttggt
gccaagggagagaggggtgagcttggagtatcagggcccagaggagaggatggtcctgag
gggccaaagggtcgcgtcgggccccccggtgagctcggaccacttggactagttggagag
aagggtaaacttggtgtacctggacttcctggatatcccggaagacaaggacccaaggga
tctcttggattcccaggattccccggcacaaacggagagaagggaacaaggggtcttggt
ggcaaatcagggccaagaggacaaagaggaccaacgggccccagagggcagagaggaccg
aggggctcgactgggaaagcaggagcaaagggaacttcgggaagtgatggccctcctggt
cctcttggagaaaggggattgcctggacctcagggagccaatggcttccccggaccaaag
ggacctcctggaccaccagggaaggacggactgcctggacaccctgggcagagaggagaa
gttggtttccaaggtaaaatgggtccatctgggcctcctggagtcgttggacctcagggt
tcatcaggagagaccggccccatgggcgagcgcggccaccccggacccccaggtccacct
ggagagcagggactttctggtccctcagggaaggagggcaccaagggagaccctggaccc
tccggaggccccggtaaagacggtccaccaggactgagaggcttccccggagagagagga
ctgcctggaacccctggaggtggaggactgaagggaagtgaaggacctgccggacctcct
ggacctgctgggtctcctggtgagagggggcaagctggtactgctggacctgttggacct
cctggcagaccaggccctcaggggcctcctggaaacgctggagagaagggagttcctggt
gagaaaggcccgattggcccagccggtcgtgatggagtgcagggtcccgtgggtctgccc
ggccctgccggatcacctggagtacccggagaggacggagacaagggtgaggttggagag
catggtcagaagggaggcaagggaggaaaaggagagcatggtcctcctggtccacccggg
ccaatgggtcccgttggtcagcctggtcctgctggtgctgatggagagctcggaccaaga
ggccagcaggggccatttggagctaaaggtgacgaaggaaccagaggattcccaggagcc
ccgggacccatcggactgcagggattgccgggaccaccaggtgagaagggagagacggga
gatgttggacctctgggtcctccaggccctccaggcccccgtggccctgctggacccagc
ggtgctgacggtcctcaaggtccttctggtggtttgggtaatcctggagctattggagag
aagggagagcctggtgagggcggaccacctggaatcgttggagaatctggaaagaagggt
cctcgtggagaacgcggagaaaagggagagggcggacaacctggaactgctggacctgct
ggaggacgaggacggcctggagatgacggacccaaaggaaaccctggtcctgttggtttc
cctggtgaccccggtcccactggtgagcttggacccagaggtcaagatggtgcaaaggga
gagagaggagaagatggtgaatcaggagaatctggctccccgggacctcctggtgagaac
ggacctcccggccccctgggaaagaggggtcctgctggaacaaaaggaccagagggacgt
cacggagagaagggaactaagggagactcaggtgctgtcggccccccaggaaaaacaggc
cccgtcggcctccagggtcaaccaggaaaaccagggacagaaggtctcagaggactccct
ggatcagtgggtgagcaaggaactccaggacttgctggacagaaaggaccacctggacct
cttggacctcccggtttgcctggtctgcgtggagaccccggtggcaagggagagaaggga
cacccaggtctcatcggtctcattgggcccccaggagagcagggagagaagggagacaga
ggtctgcctgggcctcacggatcctttggatctaaaggagagaatggaatggctggaggc
accggacccctcggccctgctggtcctcctggtctgcctggtcctcaaggtatcaaaggc
gctaagggctcatctggaggatctggtccaaagggagaaaagggtgtacaaggacctgct
ggacttcctggcccaccaggagaggtcattcagcccctgcccatccagaggagtcccaag
tccaagcgttccatcgacgccagccagatgctccctgagaacaactccgatatgcctgca
tctgacgccactggcactgagttcctgattggcagtgaaggtatggaggagatcttcggc
tctctcaactctctgcgacaggagatcgagaccatgcgtttccctcttggtacccaggac
agccctgcccgcacctgccaagacctgcacctcagccagccagatctcaaggacggagag
tactggatcgaccccaaccagggctgctccagagactccttcaaggtcttctgtaatttc
accagcggagcagagacgtgcctgtaccccagcaagagcatcaacacggtgaagatgagc
tcctgggacaaggaaactccaggatcctggtacagtgagttcaccactggcagtaagttc
tcctacgtggactctactggtgagcctgtgggtgtggtccagctgggcttcctgcgtctc
ttgagcgtccaggctcgccagaacctcacctaccactgccaccgctcagtggcctgggcc
gaccgaagcgccaagaacaactacaacagggcactgcacctccagggtgccaacgacgag
aggctgagctacgagaccaacccttacatcaaagccttggtcgatggctgctcttatcgt
aagggctttgacaggacagtcctggagatcaacacaccacaggtggagcatcttcctctg
ctggatatcaaggtgtcagactttggggagagcaaccagcagtttggctttgaagtggga
cctgtctgtttccaaggctaa
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integrated database retrieval system
