Cottoperca gobio: 115016094
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Entry
115016094 CDS
T07513
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03082
ATP-dependent chromatin remodeling
cgob03083
Polycomb repressive complex
cgob04110
Cell cycle
cgob04330
Notch signaling pathway
cgob04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115016094
03083 Polycomb repressive complex
115016094
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
115016094
04350 TGF-beta signaling pathway
115016094
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
115016094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgob03036
]
115016094
Enzymes [BR:
cgob01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
115016094
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
115016094
HDAC complexes
Sin3A-HDAC complex
115016094
BRAF-HDAC complex
115016094
REST complex
115016094
SHIP complex
115016094
MiDAC complex
115016094
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
115016094
Heterochromatin formation proteins
Other heterochromatin formation proteins
115016094
Chromatin remodeling factors
NuRD complex
115016094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
115016094
NCBI-ProteinID:
XP_029299619
Ensembl:
ENSCGOG00000010949
UniProt:
A0A6J2QNX1
LinkDB
All DBs
Position
11:complement(783295..787798)
Genome browser
AA seq
484 aa
AA seq
DB search
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
GEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAG
SLKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTYETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEEEEEDPNKRISIRAHDKRIACEEE
FSDSEDEAEGQGGGRRNAANHKKMKRVKKEEEKEAEEKKEVKEEEKEEEKMDTSGGPKEE
VKTT
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattactatgacggggacgtgggg
aactactactatggccagggtcatcccatgaaaccccacaggatccgcatgacgcacaac
ctccttctcaactatggactgtacaggaaaatggagatctatagaccacacaaagccagt
ggggaagagatgactaaataccacagtgatgactacattaagttcctgaggtccatccga
ccggacaacatgtctgagtatagcaaacagatgcagagattcaatgtcggcgaggactgt
cccgtgttcgatggtctgtttgagttttgccagctctcagcaggtggatctgtcgctggg
tcattgaagttgaacaagcagcagacggacatcgccatcaactgggccggcggactccac
cacgccaagaagtccgaggcctcaggtttctgctacgtcaacgacatcgtcctggccatc
ctcgagctgctaaagtaccaccagagggtgttatacatcgacattgacattcaccacggt
gatggagtggaggaggccttctacaccacagacagggtcatgactgtctctttccacaag
tatggggaatacttccctggcactggagaccttagggacatcggagcaggaaaggggaag
tactacgcagtaaactacccgctgagagacgggattgatgatgagtcctatgaagccatc
ttcaaacctatcatggctaaagtcatggagatgtaccagccgagtgctgttgttctccag
tgtggagcggattctctttctggagaccgactcggctgcttcaacctcaccatcaaaggc
cacgccaaatgtgtggagtacatcaaaagtttcaacctgcccctgctgatgctgggcgga
ggaggctacaccattcgcaacgtggcccgttgctggacgtacgaaacggccgtcgccttg
gactgctccatccccaacgagctgccctacaatgattactttgagtattttgggcccgac
ttcaagctgcatatcagcccgtccaatatgaccaaccagaacaccaacgaatacctggag
aagatcaagcagcgtctgtttgaaaacctccgcatgctgcctcacgcccccggtgtccag
atgcaggcgatccccgaggacgctccccacccggacagcggagacgaggaggaggaggag
gaccccaacaaacgcatctctatccgggcccacgacaagaggatagcctgtgaggaagag
ttttctgactccgaggacgaggcggaggggcagggaggaggccggaggaacgcagccaac
cacaagaagatgaaacgagtgaagaaggaggaagagaaggaagcagaggaaaagaaagaa
gtgaaggaggaggagaaggaggaagagaagatggacacatcagggggaccaaaagaagaa
gtgaagacgacttga
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integrated database retrieval system
