Cottoperca gobio: 115016865
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Entry
115016865 CDS
T07513
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cgob
Cottoperca gobio
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgob03041
]
115016865 (ythdc2)
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115016865 (ythdc2)
Spliceosome [BR:
cgob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115016865 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
R3H
Helicase_C
HA2_C
DEAD
Ank_2
HA2_N
AAA_19
Ank
ATPase
Ank_5
nSTAND3
Ank_4
AAA_22
PhoH
AAA_7
Ank_3
AAA_30
AAA_16
SRP54
Sigma54_activat
T2SSE
Motif
Other DBs
NCBI-GeneID:
115016865
NCBI-ProteinID:
XP_029300795
Ensembl:
ENSCGOG00000015029
UniProt:
A0A6J2QU82
LinkDB
All DBs
Position
12:complement(2056567..2082545)
Genome browser
AA seq
1404 aa
AA seq
DB search
MSNAGRASQKPAKSRNTAARGSISNGLKKIPIDEEVKISVNISLERFRYNDQKEMKFPSS
LSSTDRAFIHRMAQSLGYTSRSKGKGPNRFLTIRKKNGSEKPRPSMSLTLSHNSLYFIRS
LLQRFPISNRERTDMQPNNKSAMSVAAEPALSLDGSCDRSRASGRLNNGIIMVPKRRSPS
ELDSFRRSLPVHERQEEIIQVIRENRVVLVVGETGSGKTTQIPQFLLDECSRNEEPCRIF
CTQPRRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTLMSGD
ASLTTVTHVIVDEVHERDGLTDFLLTKLRDVLQKIPTLKLILSSAALDVDLFVQYFGSCP
VIRLIGRQFEVKELFLEDVLRLTGFNNKDMRKYKEETQRMEKKQKRLTEWCTVVENSSVE
EKPMSPASGPGLPQDSSSLDRGDSTFNKPTEYDTEQLEPWLLKEMDSCISNIFLNEDQDA
FIQLFNLILYEGVNVDYRHSDTGSSPLMVAAGRGFLTQIEQLLNMGADINLKASNGWTAL
DFAKHFQQTDVMDLLKSSIPLEEVSSQDESTLEQCGSAEISIEEQELLKLYHHSFDDDWV
DLDLIMDLLHHICSTTSEGALLIFLPGYDEIVSLRDRILYDDKRFSTHPERYQVFTLHSD
MQTLDQKKAMKTAPPGIRKIILSTNIAETSITINDVIFVIDSGKVKEKSFDTLSHVSMLK
KVWISKASALQRKGRAGRCRPGVCFHLFSRLRFSNMLEFQVPQLLRMPLQELCLQTKLLA
PSSCPVAEFLSKAPQPPSAHAIRNAVQMLKTIDAMDQYEDLTDLGYHLADLPVEPHLGKM
VLCAVVLKCLDPILTIACTLAYRDPFILPAMACQKRAALQCRKNFTSGTFSDHMALLRAF
QAWQKARSDGWERSFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLN
SENWAVVKAALVAGMYPNLVHINPETSTLSSSREKKVHFHPTSILTQLKENSPAKSALPT
DWLIYDEMSRGHRMASVRCCSMITAITVAVFGGCAKLPSSALQEPAVQKVTDSLLDDDSD
SETEDLAEMSLDDGLVFQLDREAAGLVFELRQKWQNLFIKRIRCPSKPWTQQEEAIIRIL
VSVLAEEEQGAGLQQPTGIGQRPRPMSSEDGPQASVKNSKNSPKLPTNTSNDRYSRMPAT
SSLLQMKAHSRDEASLPRNQFSDDPPSFSNSSCSGSLDSPSDSPCPSSSGKQTSKPLSPQ
LGSSVRYFIMKSSNVRNIDISQQKGIWSTTPSNETKLTKFFLENNLIILVFSVQGSGHFQ
GYARMTSNISQESCQDWGFMGLGGVFSVEWIHKENLPFQCSQHILNPWNDNKKVQISRDG
QELEPQAGSQLLLLWERNSGTQAQ
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgctggtcgagcatcacagaaaccagccaagagccggaacacagcagcccgt
ggttccatctccaacggcctcaaaaagattcccattgatgaagaagtcaaaatatcagtg
aacatctctctggagaggtttcgctacaatgaccagaaagagatgaaatttccctcctcc
ttgtccagcactgatcgggctttcattcatcgaatggcacagtcccttggttacacctct
aggagcaaagggaaaggaccaaatcgcttcctcaccatcaggaagaagaacggttctgaa
aaaccccggccttccatgtccctcacactctcccacaactccttatatttcatccgcagc
ctacttcagaggtttcccatcagcaatagggaacgcacagacatgcagcccaacaacaaa
agtgccatgtctgtggctgcagaacctgctctttccttagacggcagttgtgacaggagc
agggcaagcgggcgcttaaacaacggcataatcatggtgcctaagaggaggagtccatcg
gaactggacagttttcgacgctcgttgcctgtgcatgaacgccaggaggagatcatccag
gtcatcagagaaaacagggtggtgttggtggtgggagagaccggctctggaaaaactaca
cagatcccacagttcctgctggatgagtgcagcaggaatgaagagccctgcaggatcttc
tgcactcagcccagacgcctggctgccatcgctgtggctgagagagtagcagctgagaga
ggagagagcgtgggccagacggttggctatcacatcagactggagagcagggtctccccc
aagacactgctgaccttttgcaccagtggagtgttcctccgaacattgatgtcgggagat
gccagcctgacaactgtcactcatgtcattgtggacgaggtgcatgagcgtgatggtctg
actgacttcctgctcactaagttgcgggatgtgcttcagaagatccccacactgaaactg
atcctctccagtgcagctctagatgtagacctgttcgttcagtacttcggctcctgccct
gtgatccgcctcatcggaagacagtttgaagtgaaggaactctttctggaagacgttctg
aggctgacgggctttaacaataaagacatgaggaaatacaaggaagagacacagagaatg
gagaagaagcagaaacgtttgacggagtggtgtacggtggtagagaacagttctgttgag
gagaaaccgatgagccctgcgtcgggcccgggcctcccccaggacagcagctccttggac
agaggggacagcaccttcaacaagccgactgagtatgacacagaacagctggagccgtgg
ctgctgaaggagatggactcatgcatttccaacattttcctcaatgaagaccaggatgct
ttcattcagctcttcaacctcatcctctatgaaggtgttaacgtggactaccggcacagt
gacacagggtcctcgcctctgatggtggcagcaggccgagggttcctcacacagattgag
cagctgctcaacatgggggcagacatcaacctgaaggcatccaatgggtggacggcctta
gactttgccaaacacttccagcagacagatgttatggatctactcaagtcttccattcct
ttggaagaggtgagcagccaggatgagtccactctggagcagtgtggcagtgcagagatt
agcattgaagaacaggagctgctcaaactgtaccaccacagctttgatgatgattgggtg
gacctggacctcatcatggatctgctgcaccacatctgctccaccaccagtgaaggtgct
ctcctgatttttcttcctggatacgatgagatagtgtcactcagggaccgcatcctgtat
gacgataagagattctccacccaccctgagaggtaccaggtgtttactctacattcagac
atgcagactctggatcagaagaaagccatgaagaccgctccacctggtatcaggaagata
attctttccactaacattgctgagacgagcatcaccatcaatgatgtgattttcgtcatt
gattcaggaaaggtcaaagagaagtcctttgataccctcagtcatgtatctatgttaaag
aaggtttggatctcaaaagccagcgctctgcaaaggaagggaagagctgggcgctgcaga
ccaggggtttgcttccacctcttcagtcgactcaggttcagcaacatgctggaattccag
gttccacagctgctgaggatgccactgcaggaactgtgtctgcagaccaaactgctagcc
ccctcctcctgtccagtagctgagttcttgtccaaagctcctcagcctccatctgcacat
gccatcaggaacgctgtgcagatgctaaagacaatcgatgctatggaccagtatgaagac
ctgactgatctgggctaccacctggctgatctccctgtggagccccacctgggcaagatg
gtgctgtgcgctgtggtgctcaagtgtctggaccccattttaaccattgcctgtacgttg
gcctaccgtgaccccttcatccttcctgccatggcatgtcagaaaagagctgctctacaa
tgccgcaaaaatttcacctctggcaccttcagcgaccacatggcactgctgagagccttc
caggcatggcagaaggcccgcagtgacggctgggagagatccttctgtgagaagaacttc
ctgtcccaggccaccatggacatgatacttggcatgaggacacagctgctgggacagctc
cgtgccattggtttcgtgcgagcccgtggaggcagtgacatccgcgatgtgaatctgaac
tctgagaactgggccgtggtgaaggcagccctggtggctggcatgtatccaaacctggtc
catatcaacccggagacctccacgctctctagcagcagggagaagaaggtccactttcat
cccacatctatcctcacccagctcaaggagaacagcccagccaaatcagcccttcccaca
gactggttgatctacgatgagatgagccgaggccacaggatggccagtgtccgctgctgc
tccatgattaccgccatcactgtggccgtatttggagggtgtgccaaactacccagctct
gccctgcaggagcctgctgtgcagaaagttactgacagtctgctggatgacgacagcgac
agtgagacggaggacctggctgagatgagccttgatgacgggctcgtcttccaattggac
agagaggctgcaggactggtatttgaactgagacagaagtggcaaaatttgttcatcaag
aggatccgttgtccctcaaagccctggactcaacaagaagaggccatcatccggatcctg
gtttctgtgcttgcggaggaggagcagggagcaggcctgcagcagcccacagggattggc
cagcggccccggcccatgtcatcagaggatgggccccaggcttctgtgaagaactctaag
aacagccccaaactacccaccaacacctccaatgacaggtatagtaggatgccagcaacc
tcaagcctgctgcagatgaaagcccacagcagagatgaggcctcactacccagaaatcag
ttctctgatgaccctccgtccttcagtaattcctcctgctctgggagcttggacagtccc
tctgacagcccctgtccttcctcctcaggaaagcagacctcaaagccactgtcccctcag
ctgggctcatcagtgcggtacttcatcatgaagagcagcaatgtcagaaacatagacatt
tcccagcagaaaggtatctggtccaccacaccaagcaatgagaccaaactcaccaagttc
ttcctggagaataacctcatcatcctcgtcttctctgttcagggctctggacacttccag
ggctacgctcgcatgacatcaaacatcagtcaggagagctgccaggactggggctttatg
ggactaggaggggttttcagtgtggagtggatccacaaggagaatcttccattccagtgc
agccaacacatcctcaacccatggaacgacaacaagaaggtgcagatcagcagggacgga
caggagttagagccccaagcaggcagccagctgttgttactgtgggagaggaactctggg
actcaagctcaataa
DBGET
integrated database retrieval system
