Cottoperca gobio: 115017683
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Entry
115017683 CDS
T07513
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cgob
Cottoperca gobio
Pathway
cgob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115017683 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgob03041
]
115017683 (prpf8)
Spliceosome [BR:
cgob03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115017683 (prpf8)
Complex C
U5 SnRNP specific factors
115017683 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
115017683
NCBI-ProteinID:
XP_029302213
Ensembl:
ENSCGOG00000007366
UniProt:
A0A6J2QUE4
LinkDB
All DBs
Position
13:complement(9604084..9622200)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPAGMPPGVPPPIPVPDYMSEEKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDNEEDSSVAEWLYEHQPLKDTAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPLLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaccttcccctacagaggggtccctgcagggatgccaccaggtgtaccccct
cctattcccgtcccggactacatgtctgaggaaaaactgcaggagaaagcaagaaaatgg
cagcacttgcaggcaaagcgctactcagaaaagagaaagtttggctttgtggatgctcag
aaggaagacatgccacctgagcatgtccgcaagatcatcagggaccatggagacatgacc
aatagaaagtttcgccatgacaagagggtgtatctcggtgccctcaagtacatgccccat
gcagtgctgaagctgctggaaaacatgcctatgccctgggaacagatcagagatgtgccc
gtcctctaccacattaccggagctatttcctttgtgaatgaaatcccttgggtcattgag
ccagtctacatcgcgcagtggggcaccatgtggatcatgatgcggcgtgaaaagcgtgat
cgtcggcacttcaagcggatgcgatttcctccatttgatgatgaggagccgccgctggat
tacgccgacaacatccttgatgtggaaccactggaggccatccagatggagctggacaat
gaggaggactcttcagttgctgagtggctctatgagcaccaacccctcaaagacactgcc
aagtttgtgaatggcaccacctaccgtcgctggcagttcacactgcccatgatgtccaca
ctgtatcgcctggccaatcagctgctcacagacctggtggatttcaattacttttatctg
tttgacctcaaggccttcttcacttccaaggccttgaatatggccatccccgggggaccg
aagtttgagccactggtcagggacatcaacctccaggatgaagactggaatgagtttaat
gacatcaacaagatcatcatccgacagcccatcaggacagagtacaagatcgccttccca
tacctgtacaacaacttgccccaccatgtccacctcacctggtatcatacacccaacgtg
gtgtttatcaagacggaggatccagatctgccagcgttctactttgatccgctgatcaac
cccatttcacacagacattctgtcaagagccaggagcctcttcctgatgacgatgaggag
tttgagcttccagagtatgtggaacccctcctcaaggagaccccgctctacaccgacaac
acagccaatggcatcgctctgctgtgggcaccgagacccttcaacctcagatctggccgc
acaaggcgtgccattgatatccccctgatcaagaactggtatcgagagcactgccctgca
ggacagccagtaaaagtgcgtgtctcctaccagaaactgctcaagtactatgtgctcaat
gcactcaaacacagaccacccaaagcccagaagaagaggtatctgttccgctccttcaag
gccaccaagttctttcagtccaccaagctggactgggtggaagtgggtctgcaggtttgc
cgtcagggctacaacatgctcaatctgcttatccaccgtaagaacctcaactacctgcat
ctcgactacaactttaacttgaagcctgtcaagacactgaccacaaaggaaagaaagaag
tcccgattcggaaatgcctttcacttgtgcagagaagtgctgcgtctcagcaagctggtg
gtggacagccacgtgcagtacagactgggaaatgttgatgccttccagttgtctgatggg
ctgcagtacatcttcgcccatgtgggtcagctgacaggcatgtaccgctacaagtacaag
ctgatgagacaaatccgaatgtgcaaagatctgaagcatctcatctactaccggttcaac
actggtcctgtgggcaagggtccaggctgtggtttctgggctcccggctggagagtgtgg
ctgttcttcatgagggggatcacgccgctgttggagaggtggctgggcaatctgcttgcc
aggcagtttgaaggacgtcactccaagggagtagccaagacagtgaccaaacagcgtgtg
gagtctcactttgacctggagttgcgtgccgccgtgatgcatgacatcttggacatgatg
cctgagggcatcaaacagaacaaggccagaaccatcctgcagcacctcagtgagtcctgg
aggtgctggaaagccaacattccttggaaggtgccaggcctgcccactcccattgagaac
atgatcctgcgctacgtgaaggcgaaagctgattggtggaccaacacggcccactacaac
cgtgagcgtatccgccgtggagccactgtggacaagacggtgtgcaagaagaacctgggg
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggcccctacatcacagctgaagaggcggtagccatttataccaccactgttcactggctg
gagagtcggaggttctcgcccatccctttccctccactgtcctacaaacatgacaccaag
ctgctcatcctggccttggagaggctcaaggaggcatacagtgtgaagtctcgtctgaac
cagagtcagagggaggagctcggtctgattgaacaggcttacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacctgctcacccagagagccttcaaagaggtgggtatcgag
ttcatggacctgtacagtcacctggtgcctgtgtatgatgtcgagcccctggagaagatc
accgatgcctaccttgaccagtacctgtggtacgaggcagacaagaggcgtcttttccca
ccatggatcaaacctgctgacactgaaccgccacccctgctggtctacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggagactacggagggagagtgcaacgtgatgctg
gagtcccgctacgagaagatgtatgagaagattgatctgaccctgctcaacaggctgttg
cgtctcattgttgaccacaacatcgctgattacatgacagccaagaacaacgtggtcatc
aactacaaggatatgaaccacacaaactcctatggcatcatcagagggctgcagtttgcc
tcattcatcgtacaatactacggcctggtgatggacctgctggtgctgggtctgcaccgt
gccagtgagatggccggcccacctcagatgcccaatgacttcctcagtttccaagacaca
cccacagagagcgcccacccaatccgactgtactgtcgctacatcgaccggatccacatc
ttcttcaggttctctgctgacgaggctagagatctgattcagaggtacctgacggagcat
ccagaccccaacaatgagaacattgtgggatataacaataagaagtgctggccccgcgat
gcccgcatgagactgatgaagcacgatgtcaacctgggacgtgccgttttctgggacatc
aagaaccgcctgcccagatcagtgaccactgtgcagtgggagaacagctttgtttcggtc
tacagcaaagacaaccccaacctgctcttcaacatgtgtggctttgagtgccgtatcttg
ccaaagtgccgtaccagctatgaggagtttactcacaaggatggtgtgtggaacttgcaa
aacgaggtgaccaaagagaggaccgcacagtgtttcttgcgtgtggatgatgaatcgatg
cagcgcttccacaacagagtgcgtcagatcctgatggcctctggatccaccacattcacc
aagattgtgaacaaatggaacactgctctgatcggtctgatgacgtacttccgtgaggct
gtggtcaacacccaggagctcctggacctgctggtgaagtgtgagaacaagatccagacg
cgtatcaagatcggcctgaactccaaaatgcctagtcgcttccctcccgtagtcttctac
actcccaaagagttgggtggccttggcatgctgtccatgggccacgtgcttattccacag
tcagatctgcggtggtccaagcagacagatgtgggtatcacccacttcaggtctggaatg
agccacgaagaagaccagctcattcctaacttgtatcgttacattcagccgtgggagagc
gagttcattgactcccagagggtttgggccgagtacgccctcaaaaggcaggaggccatc
gcccagaacaggcgtctgacccttgaagatttggaggactcgtgggacagaggaatccct
cgtatcaacacacttttccagaaggacagacacacactggcctatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtgctgaagcagaatcccttctggtggacccac
cagaggcacgatggcaaactgtggaacctgaacaactaccgcacagacatgatccaggct
ctgggcggggtggagggcatcctggaacatacgctcttcaagggcacctactttcccacc
tgggagggtctcttctgggaaaaggccagtggttttgaggagtccatgaaatggaagaaa
ctgaccaatgcccagaggtctggtctgaaccaaattcccaaccgtcgcttcacactttgg
tggtcacccaccatcaacagagcaaatgtgtacgtgggtttccaggtacaacttgacctg
acgggaatcttcatgcacggcaagatccccacgctgaagatctccctcattcagatcttc
agggctcacttgtggcagaagattcatgagagcgtcgtcatggatctctgtcaggtgttt
gatcaggagctggatgctcttgagattgagacggtgcagaaggagaccatccaccccagg
aagtcctacaagatgaactcatcctgtgcagacatcctcctctttgcttcatacaagtgg
aacgtctcccggccatctctgctcgccgactcaaaggacgtgatggacagcaccaccaca
caaaagtactggatcgacatccagttgcgctggggtgactatgactctcatgacatcgag
cgctacgccagggccaagttcctggactacaccacggacaacatgagcatctacccctcc
cccaccggggtgctcattgctatcgacctggcttacaatctccacagtgcctatggtaac
tggttccctggaagcaagcctctgatccagcaggccatggcaaagatcatgaaggccaac
cctgccctgtacgtgctcagggagcgcatccgcaaaggtctgcagctgtactcctccgag
cccactgagccctacctgtcctcacagaactacggtgaactcttctccaaccagatcatc
tggtttgtagacgacaccaacgtgtaccgagtcaccatccacaagacctttgagggtaac
ttgaccacaaagcccatcaatggagctattttcatcttcaaccccaggactggtcagctc
ttcctcaagatcattcacacatctgtgtgggccggacagaagcgtctgggacagctggcc
aaatggaagacggctgaagaagtggctgccctgattcgctccctccccgtggaagagcag
ccgaaacagatcattgtaaccaggaagggcatgttggaccctctggaggtccacttgctc
gatttccccaacatcgtgatcaaaggctctgagttgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctgatcctgaaggctacagagcctcagatggtgcttttc
aacctctatgacgactggctcaagaccatctcgtcttacacagccttctcccgactcatc
ctgatcctcagagcgctgcacgtcaacaacgaccgcgccaaggtgatcctgaaacctgac
aagacaaccatcaccgagcctcatcacatctggcccacgctcactgacgaggaatggatc
aaggtggaagtgcaactcaaagatctcattctggcagattatggcaaaaagaacaatgtg
aacgtggcctcactgacgcagtccgagatccgtgacatcatcctgggtatggagatctcc
gctccgtcacagcagcgtcagcagattgctgagattgagaagcagactaaagagcagtcg
cagctcacagccacgcagacccgaacggtcaacaagcacggggacgagatcatcacctcc
accacctccaactatgagactcagaccttctcctctaagactgagtggagagtcagggcc
atatctgctgccaacctccacctccgaaccaaccacatctacgtgtcatctgacgacata
aaggaaacgggctacacttacatcctgcccaagaatgtcctcaagaagttcatctgcatc
tcagatctgcgagcacagattgcaggctacctgtatggcaccagtccaccagacaacccc
caggtgaaggagatccgttgtatcgtcatggtgccacagtggggcacgcaccagactgtg
cacctgcccaaccagctgcctggtcatgaataccttaaagaaatggagccccttggctgg
atccatacccagcctaatgagtcgccgcagctgtccccacaggacgtcaccacacatgcc
aaggtcatggccgacaacccttcttgggacggagagaagaccatcatcatcacttgcagc
ttcaccccgggctcgtgcacgcttacagcctacaagctgacacccagtggctacgagtgg
ggtcggcagaacaccgataagggcaacaaccctaaaggctacctgccctcccactatgaa
agagtgcagatgctgctctctgaccgcttccttggcttcttcatggtgccgggccaggtc
tcctggaactacaacttcatgggtgttcgccatgaccccaacatgaagtacgacttgcag
ctggccaaccccaaggagttctaccatgaagtccaccggccctcgcacttcctaaacttt
gcctcactgcaggagggtgagatctataacgcagaccgtgaggacatgtatgcctga
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integrated database retrieval system
