Cottoperca gobio: 115018060
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Entry
115018060 CDS
T07513
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04382
Cornified envelope formation
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04518
Integrin signaling
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115018060
04518 Integrin signaling
115018060
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115018060
09142 Cell motility
04820 Cytoskeleton in muscle cells
115018060
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115018060
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgob04147
]
115018060
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115018060
Exosome [BR:
cgob04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115018060
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115018060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115018060
NCBI-ProteinID:
XP_029302724
UniProt:
A0A6J2QXQ5
LinkDB
All DBs
Position
13:901789..953458
Genome browser
AA seq
1667 aa
AA seq
DB search
MLLTSCSAPCSYTCLWCFLVILTAPPAALGGDQTEPCAGRDCSTCQCFPAKGATGAPGPL
GRQGPQGPLGFPGPQGPPGEKGQRGDEGPTGAGGLKGDSGSVGVPGFPGLEGVPGHPGPA
GGPGFPGLDGCNGTRGERGDPGLPGGQGTDGEPGFQGLKGFKGDPSLYFVQYPGIPGDIG
PSGPTGWQGEPGPSGPTGVLGPAGLDGTNGLPGLPGLRGLPGEKGRSLPGQKGDEGDQGL
QGQPGPFEYVDPPEDLYIKGEQGDQGLKGVCGGQGLPGLDALPGIKGEKGIVGFPGPRGF
YGNPGTSGERGFKGIRGIPGLPGLIGREGSKGMMGDAGPKGLPQDVEMTHTGDIGDPGAP
GMRGPPGNIGLMGMHGPPGGPGRSIRGPAGVVGERGVQGSRGNRGDPGLVYKDRPTPGEP
GKPGSPGPIGLKGETGIPGRYCFPGAPGESGDPGDQGPPGTQGFLGFKGSIGDCARGPPV
VLKGPPGTVGDRGSTGLPGATGAPGQRGERGLPGDTGVRGQQGLGGFPGVEGFKGQKGDF
IVVDFKGEKGNRGQQGPAGRRGFSGRRGLDGSLGTPGDPGPQGESFASFPGETGLPGFSG
PKGLSGPSGPMGRGVVGAVGQRGAPGDSGPQGLTGPLGPKGVRGDTLPCVPRNPGAPGEK
GDTGNAGYTGLPGPPGFRGITGPDGTKGDKGRFGLPGLPGRQGPPGFVGDTGEEGPEGFS
YGGDPGSSGLPGSPGLRGPAGDSVVGPSGPIGFPGRLGSQGPKGVPGPPGNNGLQGLLGL
AGGPGAQGQRGQDGAPGITGPQGPKSNLCDAGKPGDGGLYGPQGSIGPPGFSGEKGEIGE
LGPPGFGPQGPKGKPGTPGFPGNPGSQGSSGPSGDSGLPGTDGQKGLMGPQGQDGWLGAP
GQTGAHGALGRTGERGFNGQDGGPGIEGPKGEQGCKGTPGPPGETKIVPIKGERGKDGPS
GIHGFPGPRGSKGAQGATGRQGYLGINGPLGIVGLPGPPGPYGQSGPPGPPGRTGSLGFI
GFPGETGDPGDLGCPGKAGEPGHQGCAGSKGDKGDSVGVSGPTGDKGPSGDFGTSGPPGP
QGDPGGPGFIGDQGQRGCKGDPGNRGDLGPPGVVGPSGPRGRSGLPGLPGKSGVDGPPGP
QGFPGLQGPPGPLGLHGLDGLKGVKGDMGTRGLGVQGPPGSKGLPGDKGPQGPLGPIGSS
QPGPPGPTGPPGAKGPPGGLGPPGKSGPDCIAPIPGPRGDPGCTGTDGEPGCAGDMGDPG
QNSPVPGDDGDNGNTGCPGPRGPKGSPGPDGLPGIPGNPGVKGIWGSSGLMGLPGNRGPR
GFTGAGGFPGPKGSAGLMGPKGEKGRVSPCPTYPPPTQGPPGAPGLLGQLGDVGLLGEIG
RTGPKGRKGDIGSEGPIGLDGTPGPDGDRGDPGLLGESGVVGNEGDPGPIGDRGPPGPTQ
NLNSGFMLVMHSQSKMIPACPLDMRVLWVGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGTCSYASRNDKSYWLSTTAAVPSIPVGGPSIEDHISRCVVCEAPSSPVALHSQ
TSNQPDCPPKWRSLWTGFSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGTC
HYFANIYSFWLTRVEATSYASDSSSTTLTEGWQQRESIGRCNVCMRE
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccccctgcagctacacctgcctctggtgcttcctggtt
atcctgacggctcctcctgcagctctcgggggcgaccagacggagccctgcgctggtcgg
gactgctccacttgtcagtgtttcccagccaaaggagcaacgggtgcgccaggtcctctg
gggaggcagggacctcaggggcccctgggcttcccgggcccccaggggcctccaggagag
aagggccaaagaggagacgaggggccgacaggagctggaggactgaaaggagactcggga
agtgtcggcgttcctggttttccgggtttagaaggagtcccgggtcacccgggtcccgct
ggaggtcctgggtttccaggactggacggatgtaatggaaccagaggagagagaggagat
cctggacttcctggaggacaagggactgatggagaaccgggttttcaaggactgaaggga
tttaagggcgacccgtcgttgtacttcgtacagtatcctggaatacctggggacatcggg
cccagtggacctacaggttggcagggtgaaccgggtccctctggtccgacaggagttctg
ggtcctgcaggactggacgggaccaacggtctccctggtctgcccggcctcaggggtcta
cctggggaaaaaggtcgatctctgccgggacagaaaggagacgagggggatcagggcctt
cagggccaaccggggccgtttgagtacgtcgaccctccagaagacctgtacattaaagga
gaacagggtgaccaggggcttaaaggagtctgtggaggtcaaggactgccgggtttggat
gctctgccagggatcaaaggagagaaggggattgtgggatttcctggacccaggggattt
tatggtaaccctggtacgtctggagagagaggattcaaagggattcgaggaataccaggt
ctcccaggtctgattgggcgagaaggttctaagggcatgatgggagatgccggtcctaaa
ggcctccctcaggatgtggaaatgacacacacaggtgacattggagaccccggggccccc
ggaatgaggggccctccaggaaacattgggctgatgggaatgcacggccccccaggaggc
cccggcagatccatacgtggtccggcaggtgttgtgggtgagaggggagttcaaggatcc
agagggaatagaggagatccgggtctggtttataaagaccgacccacacctggagaacct
ggaaaaccaggaagccccggacccataggactaaaaggagaaacggggattccaggtaga
tactgttttcctggagccccaggagagtctggagatcctggtgatcaggggcccccaggg
actcagggcttcctagggtttaaaggcagtattggagactgtgcccgtggccccccagtt
gtactgaagggccccccgggcactgtgggtgaccgggggtctacgggacttccaggagcc
acaggggccccggggcagagaggagagagaggtttacctggagatacaggagtgcgcgga
caacagggtttgggaggttttcccggtgttgaagggttcaaaggtcagaagggagatttc
attgtggtagattttaaaggtgagaaaggaaaccggggccagcagggccctgcaggcaga
cgaggattctcagggagaaggggacttgatgggtccctggggacccctggagaccccggc
ccacagggtgaaagttttgccagttttcctggagaaaccggcctccctggattctcaggg
ccaaagggattatcaggaccttcaggccccatggggcgaggtgtagtcggagcagtagga
cagcgtggggcccctggggactcaggaccccaaggacttactggccccctggggccgaag
ggggttagaggtgacactctgccctgtgtgcccagaaaccctggagcccctggagaaaaa
ggagacactggaaatgcaggttacacaggactcccgggacctccaggatttcgtggcatc
actggacctgatggaactaaaggagacaaaggacgttttggacttcctggtctacctgga
cgacaaggacctccaggttttgttggagataccggagaagaaggacctgaaggcttcagt
tatggtggagatccaggctcttcggggctcccaggctctcctggactcaggggcccagca
ggagactctgttgtcgggccctcaggacccatcggcttcccggggcgactgggctctcag
ggacctaaaggagtccctggcccccccggcaacaacggactacaaggactcctgggtctg
gctggagggcccggagcgcagggccagagaggacaggatggggccccgggtataactggc
ccccaggggcccaaatccaacctctgtgatgcaggaaaacctggagacggtggcctttat
ggccctcagggatccataggacccccaggtttttcgggggagaaaggtgagatcggggag
ttgggtcctccaggttttggccctcaaggccctaaaggaaaaccgggcactccaggtttc
ccggggaacccggggtcgcagggctcttctggccccagtggagactcaggactgccgggg
actgacggtcagaaaggtctgatggggccccagggccaggatggatggctgggtgcccct
ggacagactggggcccatggagcactagggaggacgggggagagagggttcaacggccaa
gacggaggtccaggaattgagggtcccaaaggagagcaaggctgtaaagggaccccaggg
cctccaggagagaccaagattgtgcccatcaaaggggaacgaggaaaggatggaccctct
ggcatccatggctttcctggaccacgaggaagtaaaggtgcgcaaggagctaccggtagg
caggggtatctaggcatcaacggacccctaggcatcgtaggactccccggacccccaggg
ccctatggccaatcaggacccccaggaccacctggacgcacaggatcactaggattcatc
ggcttccccggagagaccggagatccaggagacctgggatgtccagggaaagctggggaa
cccggtcaccaaggatgtgctggatccaaaggtgataaaggagactctgttggtgtttct
ggtccaactggagacaaggggccttctggagacttcgggacctcaggacctcctggacct
caaggagatcctggaggacccggtttcattggggatcaaggacagagaggatgcaaagga
gatccaggcaatcggggcgacctgggcccaccaggtgtggtcggtccctcgggtcccaga
ggtcgttcaggtcttccaggtcttcctggtaaatctggtgttgatggccctccaggacca
cagggcttcccgggactccaaggtcctcctggaccgctgggacttcacggactggacgga
ctgaaaggtgtaaagggggacatggggaccagaggtctgggggtgcagggtcctcctggt
tctaaaggtcttccaggtgataaaggtcctcaaggtcctctgggacccattggttcatcc
cagcccggccccccaggacccacaggccccccaggagccaaaggaccaccaggagggttg
ggacctccaggtaaatctggaccagactgtatagctccaatcccaggacctcgtggagat
cctggttgtactggaacagatggagagccagggtgtgctggtgacatgggggatccaggt
cagaactctccagttcctggagatgatggggacaacgggaacacagggtgccccgggccg
aggggcccaaagggatctccggggcccgatggactgccaggcatccccggaaatccagga
gtgaaaggtatatgggggtcttcaggtctgatgggactacctggtaatcgtggtcctaga
ggttttaccggtgccggtgggtttccaggaccaaagggatctgctggactgatgggtcca
aagggggaaaagggacgagtctccccctgccccacttaccctcccccaacacagggcccc
ccaggagcccctggcctcctcggtcagcttggagatgtcggcctactgggagaaattggc
cggacaggcccaaaaggtagaaagggggacatcgggtctgagggaccgataggccttgat
gggaccccaggtccggatggagacagaggagacccaggcctgctgggggagagtggagta
gtgggaaacgaaggtgatcccggtccaatcggtgaccgcggtcctccaggaccaactcaa
aacttgaactcgggcttcatgctggtgatgcacagccaatcaaagatgattcccgcctgt
ccactagacatgagagtcttgtgggtcggatacagcctgctgtacctggagggtcaggag
aaggctcacactcaggacctgggtcaggcggggtcgtgtatgcgggtcttttccaccatg
cccttctcctcctgtaacatgggaacctgctcttacgccagtcgtaacgacaaatcctat
tggctgtcgacgacggcggccgtccccagtataccagtgggcggaccctccattgaagat
cacatcagccgctgcgtggtgtgtgaagccccctcctcacctgtcgctctgcacagccag
acctccaaccagccagactgcccccccaagtggaggagcctgtggaccggattctccttc
ctcatgcatacaggtgcaggtgacgagggtggcggccagtctctgacatcctcaggtagc
tgtctgacagacttcagggcacagcccttcgtggagtgtcaggggcctcgaggaacctgc
cactacttcgccaacatctacagcttctggctgaccagagtggaggcgacctcctacgcc
tccgacagctcctccaccacgctgaccgagggctggcagcagagggagagcatcgggagg
tgcaacgtctgcatgagggagtga
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integrated database retrieval system
