Cottoperca gobio: 115018193
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Entry
115018193 CDS
T07513
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04382
Cornified envelope formation
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04518
Integrin signaling
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115018193
04518 Integrin signaling
115018193
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115018193
09142 Cell motility
04820 Cytoskeleton in muscle cells
115018193
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115018193
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgob04147
]
115018193
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115018193
Exosome [BR:
cgob04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115018193
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115018193
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115018193
NCBI-ProteinID:
XP_029302937
UniProt:
A0A6J2R0J0
LinkDB
All DBs
Position
13:complement(855424..901025)
Genome browser
AA seq
1672 aa
AA seq
DB search
MEAPGGPRRRIVPVPLLVLLLCCTACTGHAERVCHCSGKSLCHCDGVKGQKGESGYLGYD
GLPGVIGYPGNEGHQGSPGEKREHGTAGGSGLKGSRGLPGKPGFPGPPGLPGLPGHEGTI
GRAGLPGCNGTKGDVGYPGFSGVPGSVGIQGRPGQRGAKGETYVFPDTQEIKGTTGPQGR
DGENGLNGDPGEPGLPGQPGSAGLPGSPGLSGLAGEKGQEGPSPVIPGPSGQRGDQGPPG
IPGQKGIKLYAEGPKELKGEPGDGGAKGCDGLPGVPGKQEVKGDKGGRGDPGSLGKPGKD
GVRGELGEQGEAGGRGYLGPPGIDGATGEKGDHGFPGLPGETVFQHIFLKGQRGVPGPPG
VQGVQGEQGLIGFPGLQGEPGVASTGPPGHQGPPGSTGPKGESGEPGTLIVGPPGQTGVP
GGRGVEGEPGEPGIPDFLLGDVGLPGAKGLKGPMGFPGIRGEEGRAGEKGAVCSVCNLVP
GPPGPPGKPGEPGENGVTGSVGFPGPKGQKGVKSVGGPPGPQGPFGIPGLPGSPGPVGDP
GIMQRVGQKGEDGGGGAPGPPGFEGTDGSRGFTGPKGVLGQKGNPGPLGTKGERGPLGET
GARGLTGQMGPPGPPGIGDPGHPGPKGNVGVLGQRGDPGKPGEKGSPGEIRTSPGDPGQK
GEKGLSGNPGPEGVTGFPGYPGSVGPKGERGDEGFSVQGPPGFPGVKGLKGPPGAPGLPS
FGIKGRAGPSGPPGMPGPKGDGGIGFPGQQGQSGPQGEDGSVGPQGNPGPQESDGVPGPP
GQDGPPGPKGRSGLDGVPGTVGSVGLCLAGTPGPEGEQGQMGILGFTGTRGPKGAQGDPG
RPGLGPPGPQGPFGAPGFDGAPGPVGEVGLKGLRGTNGEPGTTGIRGDMGPPGVLGSPGD
DGKRGENGRPGPKGQRGVDGVRGSQGPLGPQGNRGETGPKGFQTAVEMYGDPGDSGVPGP
TGLTGTKGDRGLLGPQGLDGINGRPGNGGPQGLSGDTGRDGEKGPPGPCGLNGNQGEMGK
PGFKGGKGCAGPCGEPGSDGIPGQGGLKGAKGEPSPPGPGSKGFPGEKGNRGCSGSSGTK
GQPGDSGNFGPPGDSGPCGPKGLSGLPGCRGPPGTPGEKGCHGPPGKNGPSGPTGLTGNK
GSPGDPGPAGSRGNQGQDGIPGPPGEKGAMGAPGIGSRGPEGKTGPPGCIGENGPPGVCG
PPGPPGPGGNPGCPGPAGPHGPSGCPGKEGVCTEGGKGEKGIHGGRGPKGPPGYRGPPGP
PGPGFKGEEGFKGATGVTGPPGYAGGPGPRGEPGEDRPPGPQGHKGLMGDTGVTGPVGMK
GEIGPPGNDGSQGPPGPTGRRGLRGEDVSRDVVLLPGDKGTAGDLGIPGHNGSPGAQGTP
GGPGFKGIGGRAGRRGQGGRPGFKGDQGDQGFHGSKGIAGQRGPVGAKGVPGRSGPCRAA
PENDGFLFTRHSQELFIPECPAGSTLMYSGYSLLFINGNNRAHGQDLGTLGSCLPRFTTM
PFLFCNTDSTCRYASRNDYSYWLSTDQVLPGSMPLISGDSLKNYISRCTVCEAKANVIAV
HSQTSIIPECPSGWDPLWFGYSFVMKVQYEIKDPDLPEPVKQEWGQRGRGSRWPLLDPVW
KTSGRFPSSSVTAEEPATTTPTPTATGWLLSTPTTCSVNRSLRPIRESFQEV
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atggaggctccgggcggcccgaggcggaggatcgtcccggtcccgctgctggttctgctg
ctctgctgcaccgcctgtacgggacacgccgagagggtgtgtcactgcagcgggaagtct
ctctgtcactgtgacggggtcaaaggtcagaagggtgaatctggttaccttggatatgac
ggacttcctggagtgattggttaccctggaaacgagggccaccagggctcacctggagaa
aaaagagaacatggaacagcaggaggttcaggtctgaaaggctctcggggtcttccagga
aaaccaggtttcccaggtcctccaggactgccgggactccccggacatgaaggaaccatt
ggccgagcaggactcccaggatgcaacgggacaaagggggatgttggttacccagggttc
tctggggttccaggatctgtcggcattcaaggtcgaccaggacagcgaggtgcaaagggt
gaaacgtacgtttttcccgacactcaggaaattaaaggaacaacaggaccacaaggacga
gacggagaaaatgggctaaatggagatccaggtgaaccgggccttccaggacaaccagga
tccgccggacttcctggaagtccagggttgtcggggttagcaggagagaagggtcaggag
ggtcccagtccagtgataccaggtcccagcggacagaggggtgatcaaggcccgccgggg
atccctggacagaaaggaattaaactgtacgctgaaggacccaaagaactgaagggagaa
ccaggagacggtggagcgaaaggttgtgatggacttcctggtgtgccggggaaacaggag
gttaaaggagacaagggcgggcgaggcgatcctggttcactaggtaaaccggggaaggat
ggagtccgtggggagctgggagaacagggggaggcagggggccgggggtacctcggtcct
ccaggtattgatggagccacgggagagaaaggtgatcatggttttccaggtcttccagga
gagacggtttttcaacacatattcctgaagggccagcgtggtgtccccgggcccccagga
gtccaaggagtccaaggagaacaaggactcattggttttcctggactgcagggagagcca
ggtgtggcttccactggtccaccgggccaccaggggccacctggctcaactggacccaaa
ggagaatcaggagagccagggacgctcatcgtcgggcccccaggacaaactggagtacca
ggaggtcgtggagttgaaggagaaccaggagaaccaggaataccagattttctgctggga
gacgttggtcttccaggagccaaaggtttaaaaggcccgatgggttttcctggaatcaga
ggggaggaaggacgagcgggtgagaagggggcggtgtgctcggtctgtaaccttgttcct
ggtccccccggacctccaggcaaaccaggagagccaggtgaaaatggggtgacaggatca
gtcggttttccaggacccaaaggtcaaaaaggggtaaaaagtgttggaggaccacctggt
ccacagggcccctttggtatccccggcctcccgggttccccaggacctgttggtgaccct
gggatcatgcagagggtggggcagaagggtgaggacgggggtggaggggcaccgggacca
ccaggtttcgaagggacagatggatctcgaggatttacaggaccaaaaggtgttctggga
cagaaaggaaatcctgggcctctggggacaaaaggtgaaaggggcccgcttggtgagact
ggtgcaagaggattaacaggtcagatgggacctccaggaccacctggaattggggatcca
ggacatccaggtcctaaaggcaatgttggagtcctgggacagcgaggggatcctggaaaa
ccaggtgaaaaaggttctccaggtgaaatcagaacctctccaggagatccaggacagaaa
ggagagaaaggtttatctggaaacccgggacctgaaggcgtgacaggatttccaggctat
ccaggatctgttggtccaaagggagaaagaggagatgaaggattttcagtccaggggcct
ccaggttttcccggggtcaaaggacttaagggccctccaggagctccaggtttaccaagt
tttggtatcaagggacgtgcaggtccatcaggccccccagggatgccgggccccaagggg
gacggcggtatcggttttccaggtcagcagggtcagtcaggtccccagggggaagatggt
tctgtggggcctcaaggaaaccctggaccacaggaatcagatggagttccaggacctcca
ggacaagacggacctcccggacccaaaggtcgtagtggtctggatggtgtacctggtacg
gttggttctgttggactgtgtttagctggaactccgggacctgaaggagagcagggacaa
atgggcatccttggattcacagggacacggggcccaaagggtgcgcagggtgaccccggc
cggccaggcttgggacccccggggcctcaggggccttttggggccccagggtttgatgga
gctccagggccagtaggagaagttggactgaagggcctgagagggaccaatggggagcca
ggaaccacaggcatcagaggggacatgggtcctccaggagttcttggaagtccaggggat
gatggaaaacgaggagagaatggacgaccaggaccgaaaggtcagaggggtgttgacggg
gtcaggggttctcaggggcctctggggcctcaggggaaccgaggagaaactggaccaaaa
ggatttcagacagctgtggagatgtatggagatcctggagattctggagtcccggggcca
acaggtctcactggtacaaagggagacaggggcctccttgggccacagggcctcgacggc
atcaatggtcgacctggaaatggcgggccgcagggactttctggagatacaggcagagat
ggagagaaaggtcctcctggtccttgtggactcaacggtaaccaaggagagatggggaag
ccaggttttaaagggggtaaaggttgtgcagggccttgtggggaacctggatcagatgga
ataccaggacaaggaggacttaagggtgctaaaggagaaccaagtccacctggaccagga
tctaaaggatttccaggagaaaaggggaatcgaggatgttcaggatcatcaggaacaaag
gggcaaccaggggacagtggaaactttggtcctccaggagatagtggcccctgtggcccc
aaaggcctttctggactcccgggatgcagaggtcctcctgggactcctggtgaaaagggt
tgtcatggtcctccagggaaaaatggcccttcaggacccacaggcctcacaggtaacaag
gggtctcctggagatcctggtccagctggttccagaggaaaccagggacaggacgggata
cctggtcctcctggagagaaaggagctatgggagctcctggaatcggatcccggggccca
gaggggaagacaggtccacctggttgcattggagagaatggtcctcctggtgtctgtggt
ccacctggcccccctggtcctgggggaaacccaggttgtcctggtcctgctggacctcat
ggtccttctggttgccctggcaaggagggagtctgcactgaaggaggcaaaggagaaaaa
ggaatccacggaggacgaggacccaaaggtccgccgggctatcggggtcctcctggtcct
ccaggtcctggatttaaaggagaggagggatttaaaggagcaacaggtgtgacaggtcca
cctggttacgccggtggcccaggccctcggggagagccgggtgaagacagaccaccaggc
ccacagggacacaaaggcctgatgggagacactggtgtcacaggaccagttggtatgaag
ggggagatcggaccaccaggtaacgacggctcacaaggacctccaggacccacagggagg
agaggtctgaggggggaggacgtatccagggacgtggtgctgctgccaggagataaaggc
acagctggagacctgggaatcccaggacacaatggatccccaggggcccaaggaacacct
ggaggtccaggttttaagggcatcggaggaagggctggtagaagaggacaaggtggtcgt
cctggatttaaaggggaccaaggagatcaaggattccatggatcaaaaggtatcgcaggt
caacgaggtccggttggtgctaaaggtgttccaggtcgatcgggtccctgccgggcagca
ccagagaacgatggcttcctgttcaccagacacagccaggaactctttatcccagaatgc
cctgcaggatctactctgatgtacagcggatactcactgctgttcatcaacggaaacaac
cgagctcacggacaagacctgggtacgttgggtagttgtttacctcgcttcaccaccatg
cccttcctgttctgtaacactgacagcacctgtcgctacgcttcgcgcaacgactactcc
tattggctgtccaccgaccaagtcctgccgggcagcatgccgctgatctccggggattca
ctgaagaattacatcagccggtgtactgtgtgtgaggccaaagccaacgtgattgccgtc
cacagtcagaccagtataattccagagtgtccgtcaggctgggaccctctctggttcgga
tactccttcgtgatgaaggtacaatatgaaataaaagaccctgacctcccagaaccagtg
aaacaggagtgggggcagaggggtcggggcagccgctggcctctcctggatcctgtctgg
aaaacttcaggaagattcccttcatcgagtgtcacggcagaggaacctgcaactactaca
ccgactcctacagctactggctggctgctctcaaccccaacgacatgttcagtaaaccga
agcctcagaccgatacgggagagtttccaggaagtctga
DBGET
integrated database retrieval system
