Cottoperca gobio: 115018553
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Entry
115018553 CDS
T07513
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115018553
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115018553
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115018553
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
115018553
NCBI-ProteinID:
XP_029303500
UniProt:
A0A6J2R281
LinkDB
All DBs
Position
1
Genome browser
AA seq
1609 aa
AA seq
DB search
MCSSAYRVRAERCHVSSCPRLHSDVRSFLAHPIDVLKVLELSEDMEGVSLESGLCTSRQG
QEETDLSFKIDKKIQLSAPTNQLFPDSPFPMNFSVMTTVRAVKGSQVFLLSLYDSQGTQQ
LGVEVGRSPVFLYENHKGQPPPELYPTFRKINLADGKWHRVAYSVEGQSVTLYLDCVKLD
TLDLLRGHDPHVSTEGVTVFGTRLLDEDVFEGDIQQLLIVDDPRAAETYCQDYIPDCDAA
LPYNTILAEAEEVERVPKKHVVEQFEEFDYSDLYEDLSVAAAPNVTEYEIVEYEDYDNTT
EYDHVNEYEYEEEYDERYGPAERERELSLNTQDIPEKGQKGEPSFLGEGTQITGSHGPPG
PEGEAGPSGVTGPVGPQGDTGELGPPGRPGLNGADGIPGPPGNIMLIPFQSSGDPKSGTV
VSAQEAQAQAILQQTKLAMKGPPGPLGLRGRPGPLGIPGPSGLKGSSGDMGPMGPSGQSG
ITGLNGRLGKRGRAGTDGGRGAIGENGAKGDRGFDGLPGLPGNKGHKGDRGKPGLLGSSG
VSGEKGSEGPSGPRGQPGDAGSRGLNGPRGRAGPQGQPGIRGIDGVQGSKGNIGAPGDIG
APGQQGNPGIVGFPGPQGLVGLPGEKGPQGKKGMQGLAGNDGPSGHPGREGTPGEKGLPG
PLGVQGPVGYPGQRGVKGADGIRGLKGSKGEKGEDGFPGSKGEFGGKGDVGDNGVTGGRG
EDGPEGHKGQTGPIGEAGTSGTSGEKGKLGVPGLPGYPGRLGPKGSDGFPGVLGAAGEKG
KKGPAGQPGGAGQRGPNGARGGRGARGPTGKSGEKGTSGHDGTQGSPGERGPQGPQGRNG
ESGPKGSSGPGGKDGLPGHPGQRGEPGFQGKTGPPGPSGVVGPQGKSGESGPTGDRGHPG
APGVPGEHGLPGAAGKEGGKGDPGITGTSGKNGPPGLKGFRGSRGATGIMGPPGLKGGSG
PTGLSGGIGSTGERGPPGTAGAIGQPGRSGAIGGPGPMGEKGEPGEKGPIGPAGQDGDQG
PLGMLGASGPAGPPGDDGDKGEQGESGQKGSKGDKGESGPSGSIGTQGVIGQSGLPGIDG
LRGPRGQQGMYGPKGDEGLRGFKGSRGPIGLQGMPGLPGEKGESGHGGLMGPPGQQGPSG
PQGPIGGQGPSGRLGMIGQPGVVGEKGEDGEAGDPGAVGVPGRLGGKGDQGEKGDTGPSG
AAGPPGARGLTGEDGAKGNSGPPGLTGDLGQQGEAGPNGVDGLPGTKGDTGDPGKSGPPG
AAGEQGPSGPPGRRGHLGKAGKEGKSGLKGTKGAAGLEGPVGKTGPVGAQGNPGKPGPQG
LRGIPGPGGEQGLNGPPGQTGPPGPMGPSGLPGLKGDHGKKGDKGHGGLIGLIGPPGDIG
EKGDRGLPGNQGLSGPKGDEGLVGIVGPSGPPGPTGLSGAIGTKGSKGNQGPIGPQGDTG
PVGLPGLPGKPAASIYPLPERGRRRRTNTLVDGAAFEDEDEEEAAAGREDEWMQRDQAEP
DAWMNEKEGQDMEEVFASLSSMKVEVEDLRNPQGTYYSPARTCKELWLLHPELPNGEYWI
DPNQGCHRDSFKVFCNFTAEGETCLYPDKKFQSVKIGSLERGEVRHLVQ
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcaagtgcttatagagtaagagcagagcgttgccatgtctcgtcttgtcctcgg
ctgcattcagatgtcagatcatttcttgcacatcctattgatgtcctgaaggtcctggag
ctgtcggaggacatggagggcgtgtcgttggagtcaggactgtgcaccagcaggcaggga
caagaagagacggacctctcctttaagatcgacaagaagattcagctgagcgcgcccacc
aatcaacttttccctgattcaccattccctatgaatttctcagtgatgacaacagtccga
gctgtgaaaggttcacaggtctttctcctttccctgtacgactcgcagggcacacagcag
ctgggtgtggaggtcgggcgttctcctgtcttcctgtacgagaaccacaagggtcagcca
cctccagaactttaccccacctttagaaagatcaacctggctgatggcaagtggcacaga
gtagcctacagtgtggagggccagtcagtgactctctacctggactgtgtcaaactggac
accctggacttgctcagaggtcacgacccccacgtcagcactgagggggtcactgtgttt
ggaacacgactgctggacgaagacgtgtttgagggagacatccagcagctgctgatcgtc
gatgaccccagagcagcagagacgtactgtcaggattacatcccagactgtgacgcagct
ttaccctacaacaccatattagcagaggccgaggaggtggagagagtacctaagaaacat
gtggtggagcagtttgaggagttcgactacagcgacctctatgaagacctctctgtggca
gctgctcctaatgtcactgagtacgagatcgtagagtacgaagactacgacaacacgaca
gagtacgaccatgtgaacgagtatgaatacgaggaagaatacgacgagcgctacggaccg
gccgagagagagcgggagctttctcttaacacacaggacataccggagaaaggacagaaa
ggagagccaagcttcttgggagagggaacgcagattacaggatcacacgggcctccagga
cctgagggagaggcagggccctctggagtcacaggaccagtaggacctcaaggagacacc
ggggagctgggccctccagggcggccaggccttaacggagctgatgggataccaggtccc
ccaggaaacatcatgctcataccgttccagtcaagtggtgatccaaagtcaggaactgtg
gtttctgcacaggaggcgcaggctcaggccattctgcagcagacaaagctggctatgaag
ggacctccagggccgctcggcctcaggggaagacctggaccactgggtataccaggtccc
tctgggctgaagggttccagcggagacatggggccaatgggtccttcaggacagtcaggt
atcacaggtctgaacggacggctggggaaaaggggtcgagcaggtacagacgggggccgt
ggtgcgataggagagaatggagcaaagggggatagagggtttgatggcttgccaggtctc
ccgggaaacaaaggacataaaggggacaggggtaagccaggtcttttaggttcttctgga
gtgtcgggagaaaagggctctgaggggccgtctgggccaagaggacaaccaggtgatgct
ggttccagaggtctgaatggacccagaggtcgagctggtccccaaggccaacctggcatt
cgaggaattgacggggttcagggttcaaagggaaacattggggccccgggagacatcgga
gcacctggacagcaaggcaaccctggcattgtgggctttcctggtcctcaggggttagta
gggctgccaggagaaaagggacctcaagggaagaaagggatgcagggattagctggaaac
gacgggccctcaggtcaccccggaagagaagggactccaggtgaaaagggactgccgggt
cctttaggggtgcaggggcctgttgggtaccctggacaacgaggagtcaagggagcagat
ggaatcagaggattaaagggaagcaaaggcgaaaagggggaggacggtttcccagggtcc
aaaggggagtttggaggaaagggggacgttggagacaacggagttacaggtggccgagga
gaggatgggcccgaggggcacaaaggacagacgggccctataggagaagctggcacctct
ggtacttctggagagaagggcaaactgggagttcctgggctgccaggatatccagggaga
ctgggaccaaagggctctgatggctttcctggtgtcctgggagctgccggagagaaaggg
aagaaaggtcctgcaggacaaccgggaggcgccggccagaggggtccgaatggtgcacga
ggtggcagaggagcacgagggccaacagggaaatcaggagaaaagggcacctccggacat
gatggaacccaaggatctcctggagaaaggggacctcaaggaccgcaaggaaggaatgga
gagtcaggacccaaaggatcaagtggtcctggtggaaaagacggacttccaggtcaccca
ggtcaaagaggagagccgggattccaagggaagacaggacctccaggaccctcaggtgtt
gtggggccacagggcaaatcaggtgaatccggtccaacaggggaccgaggtcacccaggg
gcaccaggtgtacctggagagcatggtttacctggggctgctgggaaggaaggtggaaag
ggagatccaggtataactgggacttctgggaagaacggtcctcctggactgaaagggttc
agagggagcagaggagccactggaattatgggacctcctggtctgaaaggaggatctgga
cctactggattatcaggcggaatcgggtcgacaggtgagaggggccctcccggaacagca
ggtgccatcggacagcccggtcggtccggagcgatcggaggacccggaccaatgggagag
aagggcgagcctggagagaagggtccgatcggaccagccggtcaggatggagatcaggga
cctttagggatgcttggggcttcgggccctgcaggacctccaggagacgatggggataag
ggagagcagggagaatccgggcagaaaggcagcaaaggcgacaaaggagaatcaggcccc
tcagggtccattggcactcaaggtgtaattggtcagtcaggacttccgggtatagatgga
ctgcggggcccccgaggtcagcagggcatgtacggtccgaaaggagatgagggactccgc
ggcttcaagggctcgagaggaccaataggattacagggcatgcccggccttccaggagag
aagggagagagtggacatgggggactaatgggtccacctggtcaacaaggcccctctggt
cctcaaggacctattggaggacagggtccgtctggtcgcctcgggatgataggacagcca
ggtgttgttggagagaagggggaggatggtgaagcaggtgaccctggagcagttggtgtt
ccaggaaggctaggaggaaaaggagaccagggggagaagggagatacgggcccttcagga
gcagctggtcctccaggagccaggggcctgacaggggaggatggagccaagggcaactct
ggtcctccaggtctcaccggggacctcgggcagcagggagaggctgggcccaatggtgtg
gacggtctgcccgggactaaaggagacacaggagaccctgggaaatctggaccaccagga
gcggcaggagaacagggaccatctggacctcctggacgaaggggccacttgggaaaagca
gggaaggaaggaaagtcaggcctgaagggaacaaagggtgcagccggtttggagggtcca
gtaggaaagacaggacccgtaggtgcccagggaaaccccgggaagcccgggcctcaaggt
ttaagagggatccccggccctggaggtgaacagggtttgaatggaccacctggtcagaca
ggccccccaggccccatgggtccatcgggattaccaggtctaaagggagaccatggcaag
aagggagacaagggtcacggtggtctaataggtctgatagggcctccaggagacatcgga
gagaagggcgacagaggactgccaggaaaccagggactgtcgggtccaaaaggagatgag
ggtctagttggtatagtaggtccctccggccctcctggcccaaccggtctgtctggtgct
attggtacaaagggctctaaaggaaaccagggtccgattggtcctcaaggagacactggg
cctgtaggacttccaggactaccagggaagccagcagcttccatatatcctctgccagag
cgaggacggagaaggagaaccaacaccttggtggatggtgctgcatttgaagatgaagat
gaggaggaggcggcagctggacgagaggatgaatggatgcagagggaccaggctgagccg
gacgcttggatgaacgagaaggagggccaagacatggaagaagtgtttgcgtctctgtcc
tctatgaaagtagaggtggaggatctgcgtaacccacaagggacgtactacagccccgcc
cgcacctgcaaggagctctggctcctccaccccgagctccccaacggtgagtactggata
gatccaaaccagggttgccatagagactccttcaaggtgttttgtaacttcactgcagag
ggagagacgtgtctttaccctgacaagaagttccagtcggtaaagattggcagcctggaa
aggggagaagtccgacacctggtacagtaa
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integrated database retrieval system
