Cottoperca gobio: 115019215
Help
Entry
115019215 CDS
T07513
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cgob
Cottoperca gobio
Pathway
cgob04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115019215
03041 Spliceosome [BR:
cgob03041
]
115019215
03036 Chromosome and associated proteins [BR:
cgob03036
]
115019215
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115019215
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115019215
mRNA cycle factors
Common to processing body (P body) and stress granule
115019215
Spliceosome [BR:
cgob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115019215
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
115019215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
115019215
NCBI-ProteinID:
XP_029304522
Ensembl:
ENSCGOG00000003388
UniProt:
A0A6J2R4Z6
LinkDB
All DBs
Position
2:6443939..6461932
Genome browser
AA seq
738 aa
AA seq
DB search
MSHVAVENVHGLEQQLAVLDLSAADGQGGGANRNVFAAGRQGAYTIAPAANYGWDGGRNN
FVNGYHDNRMAGGNTFNRGPPRMERGRGGVGGGGYRGNRGGAFNPINPAQPMTFGGYENK
DAGGWNTAKDTYGSFANNRGKSAFFNDRGNANRGRFDHGGFGGGGGGGGGGGGGGGGGGG
GGNSRWVDESREGEEWAKPTPRNERLENELFAASNTGINFEKYDDIPVEATGQNCPHHIE
SFQDVDMGEIVMGNIALSRYTRPTPVQKYAIPIVKAKRDLMACAQTGSGKTAAFLLPILS
QIYNEGPGEALNTAKASGQDNGKYGRRKHYPMSLILAPTRELALQIYDESRKFSYRSRVR
PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMG
FEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENIT
QKVVWVEESDKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTLVFVETKKGADALED
FLYREGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINFDLP
SDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQ
HKSTNRGRSKRFSGGFGARDYRQTAAGGTAGGFGGRGGRNQAGHGGTRGFGGGGFGNFYT
SDGYGGNYSHSQVDWWGN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgtccacggtctagagcagcagcttgctgtcctagac
ttgagtgcggcagacggacaaggtggcggcgccaatcgaaatgtcttcgctgctggtcga
cagggtgcctacaccatagcacccgcagcaaactatggttgggatggagggcgcaacaac
tttgttaatggctaccatgacaaccgcatggctggcggcaacacttttaaccgaggcccg
cctcgcatggagcggggccgaggtggcgtcggaggaggaggctaccgtggcaacaggggc
ggagccttcaatcccatcaacccagcacagccaatgacctttggtggctacgaaaataaa
gatgcaggtggctggaacactgccaaagacacctatggcagttttgccaacaaccgaggg
aagtctgcattcttcaatgaccgaggcaatgctaatagggggaggtttgatcatggtgga
tttggtggaggaggtggtggtggtggtggtggtggaggaggaggaggaggaggaggtggt
ggaggaaacagccgctgggtggatgagtccagagaaggagaagagtgggccaaaccaaca
ccacgcaacgaacgccttgaaaatgagttgttcgctgccagtaacactgggattaacttt
gagaaatacgatgacattcctgtcgaggccacaggacagaactgccctcaccacatcgag
agtttccaagatgtagacatgggtgagattgtcatgggtaacattgctctgagtcgctac
accaggccgacccctgtccagaaatatgccattcctattgtcaaggcaaagcgggacctc
atggcctgcgcacagacaggttctggtaagactgcagcgttcctgctgccgattctcagc
cagatctacaacgaaggaccaggagaagctcttaacacagctaaagcatctggacaggat
aatggaaagtatgggcgtcgtaagcactaccccatgtcactgatattggctccaaccaga
gaactggcactgcagatttatgacgaatccagaaagttctcctaccgctcgagagtgcgt
ccctgtgttgtgtatggaggagcggacattggccagcagataagagatctggagaggggc
tgccacctgctggtggctacacccggcaggctggtggacatgatggagaggggcaagatt
ggactggacttctgcaactacctggtgctggatgaggcagatcgtatgttggacatgggt
tttgaaccacagataagacgcattgttgagcaggacaccatgccgcccaaaggcatccga
cagaccatgatgttcagcgcaaccttccctaaagagatccagatcctggccagggatttc
ctggaggagtacatcttcctggcggtgggcagagtgggttccacctcagagaacatcact
cagaaggttgtgtgggtggaggagagcgacaagaggtctttcctcctggacctgctcagc
gctacagtcatccccagcgaggtacaggacaatactggagacaacatagagaaacctggt
aaggactcgttgactctggttttcgtggagaccaaaaaaggcgccgacgccttggaggac
ttcctgtatcgagagggctacgcctgcaccagtatccatggtgaccgctctcagagggac
cgagaggaggccctgagccagttcagatcaggaaaatgccccattctggtggccacagcg
gtagcagctcgaggtctggacatctccaacgtgaaacatgttattaactttgacctgccc
agcgacatagaggagtatgtccaccgcattggacgtacaggacgagtcggaaacctggga
ctggccacatcgttcttcaatgataaaaatgggaacatcactaaggacctgctggacatc
ctggtcgaggccaaacaggaagttccctcatggcttgagagcctggcttatgaacaccag
cataagagcaccaacagaggacgctctaagagattctctggagggtttggagcacgtgat
tatcgtcagacggcagccggaggcaccgctggagggtttggaggacgtggaggtcgcaac
caggcaggacatggaggaacccgcgggtttggaggaggtggttttggtaacttctacacc
agtgacggctacggagggaactactcacactctcaagtggactggtggggcaactag
DBGET
integrated database retrieval system
