Cottoperca gobio: 115019331
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Entry
115019331 CDS
T07513
Symbol
rad50
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cgob
Cottoperca gobio
Pathway
cgob03440
Homologous recombination
cgob03450
Non-homologous end-joining
cgob04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115019331 (rad50)
03450 Non-homologous end-joining
115019331 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
115019331 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgob03032
]
115019331 (rad50)
03400 DNA repair and recombination proteins [BR:
cgob03400
]
115019331 (rad50)
DNA replication proteins [BR:
cgob03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
115019331 (rad50)
DNA repair and recombination proteins [BR:
cgob03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
115019331 (rad50)
BRCA1-C complex
115019331 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
115019331 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
AAA_16
AAA_29
zf-met
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
115019331
NCBI-ProteinID:
XP_029304701
Ensembl:
ENSCGOG00000007389
UniProt:
A0A6J2R3J6
LinkDB
All DBs
Position
14:16950314..16969954
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNAEKVTIHRSMSCTQKAKNYSFKSLEQVITR
MKDGEKVSMSSKCGELDREMISALGVSKPVLNHVIFCHQEESNWPLCEGKALKDKFDSIF
AATKYIKALETMRQLRLKQSHTVQECQVELRYLKQNKEKAQQIREIVATKEAQLMTSKDS
IQHIEGQIDPLEDRLTDIDMKLGKVMKLDNEIKALDSRKQQMEEDNKELEETMERVFQGS
DEQLQEIYQNHQRTVKEKERRLTECQKELERAGRECQRLNRVKAELLVEQGRLQLEADRH
TQNIKDRDTQVRSLSSYLEMEGYDRPPFATLQLESFHRHVTQRLGQEKETVKQVMVDMQE
KEHQKQQSIDEIRDKKTGLERTVELKRDLQGKKQQELKNVKTELQRLEGSSSRLQELENE
LAKVERELQSAVQSSNVEELKAEVVQLQREKTELDRTSRQLDQEMGMLNTHTTARTQMDM
LKKDKTEKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYAKSKEINSTRDKLAKLNKD
LASSEQNKSHIAAEVRKKEQQLASDEEKFFNVCGSQDLEQDLGKLRDDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSDSDLQEVISDMQSKLRLVPDKLKNTEQDLT
RKEKKRDEMMALRPIRHSIAQFQEKELPELRNRLQTVNREIERLKGDVEEHETLLGSLMS
EEETAKACLQDISLMDRYQMDLKDLERKIAQQATKLQGVDLTRTSQQVSQEKQETQHKLD
TASSKMELKRKLIQDQQDQIQMLKSAVNETRAEKLQLSSDMQKQQQLEEQFAECTTEIQA
LTRDIREAKEQLSPLSASLEKLQQEKQELVERKRQKQEEGQEKINAIKEKVKAISTLERD
ITKYVDDDKEKYKEQHEAELQETNTQLHEAEKYKEKTNKEIGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVTKREALIKDMGNMQVLQLRQERRASERKLEELKKNRSISLGRQKG
FEEEILHHRKELREEQYNKADELHKNKMITMRTTQLVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVRRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRDNIESLAHALVEIIKSRSCQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatccttggggtgaggagctttgggattgaggataaa
gacaagcaagtcatctctttcttcactccactgactgtgctggttggacccaacggagca
gggaaaacgactattattgagtgccttaaatatgcaacatcgggagagcttccacctgga
tctaaaggaggtgcatttgttcatgatccaaaggacgcccatgagacagacgtgcgagca
cagattcgactcttgttctccgacgtcaacgcagagaaagtgactatccatcgctccatg
tcctgcactcagaaggcaaagaactactccttcaaaagcttagagcaggtcattacaaga
atgaaagacggtgagaaggtgagcatgtcatcaaagtgcggcgaactggatcgggagatg
atttctgcactcggcgtgtcaaagccagtgctgaatcatgtcattttttgtcaccaagaa
gagtctaactggccactttgcgagggcaaagcactcaaagacaagtttgactccatcttc
gctgcaaccaagtatatcaaagctctggagacgatgcgtcagttgcgtctcaaacagagt
cacacagtccaagagtgtcaggtggagctgcgctacctgaagcagaacaaggagaaagcc
cagcagattagagagatcgtggccaccaaggaggctcagctgatgacctctaaagacagc
atccagcacatagagggccagattgatccactggaggatcgactgacggatattgacatg
aaactggggaaagtgatgaagctggacaacgaaatcaaggctttagacagcaggaagcaa
cagatggaggaggacaacaaggagctggaggaaacaatggaacgggtgttccagggttca
gatgagcagctgcaggagatttaccagaaccaccagaggacggtgaaggagaaggagcgc
aggctgacggagtgccagaaggagctggagagagctggccgtgagtgtcagagactcaac
agagtcaaggctgaactcctggtagaacaaggtcgtctacaactagaggctgaccgccac
actcaaaacatcaaagaccgcgacactcaggttcgttctttgtcgtcctacctggagatg
gagggttacgaccgaccacccttcgccactcttcaacttgaaagctttcatcgtcatgtc
acacagagactgggtcaggagaaggagacagtcaagcaggttatggtggacatgcaggaa
aaggagcatcagaagcagcagtccatcgacgaaataagggacaagaagactggcctggag
agaacggtggagttgaagagagacctgcagggaaagaagcagcaagaactgaagaacgtg
aagacagagctgcagaggctggagggttcgtccagccgactgcaagaactggagaatgaa
ctggctaaagtggagcgtgagctgcagagcgcagttcaaagctccaacgtggaggagctg
aaggccgaggttgtgcagctccagagagagaagactgaacttgaccgcacatcgagacag
ctcgaccaagagatggggatgctgaacacgcacaccaccgcacgcacgcagatggacatg
ctgaaaaaggacaagactgagaaggaggagcaggttcgtaagatcaagtctcgtcacagc
gaggatctggtgtcattgctcggccactttcccaacaaaagagagctggaggactggatc
tatgccaagtctaaggaaatcaacagcaccagggacaaacttgccaaactcaataaggac
ctggcatcaagtgagcagaataaaagccacattgctgctgaggtacggaagaaggagcag
cagttggctagcgacgaagagaagttcttcaatgtgtgtggcagtcaagatctggagcag
gacctgggcaaactgcgagatgatttggaaaagatctccaaacaaagagccatgctagcc
ggagccacagcagtgtacacccagttcatcagccagctgacggaggagagagagccctgc
tgccctgtgtgccagcggacgttcccttcagactctgatctgcaggaagtgatcagtgac
atgcagtccaaactacgcctggtgccagacaagctgaaaaacacagagcaggacctgacg
aggaaggagaagaagagagatgagatgatggctctcagacctatcaggcattccattgca
cagtttcaggaaaaggagttgcccgagttgagaaaccgcctgcagacagtgaaccgagag
atcgagaggctgaagggcgacgtggaggagcacgagactctgcttggctccctcatgtca
gaggaggaaacggccaaggcctgcttgcaggacatatctctcatggacagataccagatg
gaccttaaagatttggagaggaaaatagctcagcaggcaaccaaactccagggagtagac
ttgaccagaaccagccagcaagtcagtcaggagaaacaagaaactcagcacaagctagac
acagcctccagcaagatggagctgaaacgtaagctgatccaggaccagcaggatcagatt
cagatgctgaaaagtgctgtgaatgagacgagagcagagaaactccagctgagcagcgac
atgcagaagcagcagcagctggaggagcagtttgccgagtgcaccactgaaatacaggcc
ttaaccagggacatcagggaagcgaaggaacagttgtcccctttgtctgcttctctggag
aagctgcagcaggagaagcaggagttggtggagcgcaagaggcagaagcaggaagaaggt
caagagaagatcaatgccattaaagaaaaagtgaaggcgatcagcaccttggaaagagac
atcactaaatacgtcgatgacgacaaagaaaaatacaaagagcaacatgaggctgagctt
caagaaaccaacacgcagctccatgaggctgagaagtataaagagaagaccaacaaggag
atcggaaacatccgtcaggacatcgacactcagaaggtccaggagcgctggttgcaggac
aacctgaccttgaggaaacgtgttgaggagttgaaggaggttgtgactaaacgcgaggct
ctgataaaagacatgggcaacatgcaagtcttgcagctacgccaagaacgacgtgcgtcc
gaacgcaagttggaagagttgaagaagaaccgcagtatttcactgggccgtcaaaaaggc
ttcgaggaggagatactgcatcacagaaaagagctgcgagaagagcagtacaacaaagct
gatgagctccacaaaaacaagatgatcacaatgaggacaacgcagctggtgattaaagac
ctggatctctactacaaggcccttgatcaaaccatcatgaagttccacagcatgaaaatg
gatgagatcaacaagatcatcagagacctgtggcgcagcacctacaggggtcaagacatc
gagtatgtggagatccggtctgatgtggacgaaaacgcctctgctggagtccgccggagg
gtttacaactacagagtagttatggtgaaaggagacacagctttggatatgagaggacgc
tgcagtgctggtcagaaggtgttggcatccctgatcatccgtctggctctggcagagacc
ttctgtctgaactgtgggatcctggccctggatgagcccaccaccaacttggaccgggac
aacattgagtcactggcccacgccctcgtagaaatcatcaagagtcgctcttgccagcgt
aacttccagctgctgatcatcacccacgacgaggactttgtggagctgctgggtcggtcc
agctacattgagcacttctaccgcatccgtaagaaccaggaccagaactctgagatcaca
aagtgcagcatcacctccctctcatcgtatctccactga
DBGET
integrated database retrieval system
