Cottoperca gobio: 115020071
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Entry
115020071 CDS
T07513
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04518
Integrin signaling
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115020071
04518 Integrin signaling
115020071
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115020071
09142 Cell motility
04820 Cytoskeleton in muscle cells
115020071
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgob00535
]
115020071
Proteoglycans [BR:
cgob00535
]
Extracellular matrix (ECM) proteoglycans
Others
115020071
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115020071
NCBI-ProteinID:
XP_029305809
UniProt:
A0A6J2R6B0
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All DBs
Position
15:11442895..11456847
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AA seq
674 aa
AA seq
DB search
MAQVPSVRGPLLVLLLQLVLICSAQRSQGPTGPGGVPGIDGIAGERGEDGDEGLSGPDGD
EGKPGSSGLPGIPGNDGLTGPFGDPGPDGPLGQKGEPGLSGPRGAAGVGPDGPPGPPGPG
GLLGEVGKVGPLGSIGVRGPQGPRGPTGSRGAAGMQGSADLCPNSCPPGTSGHPGLPGMK
GHKGVKGEVGEPGKQGHKGEEGDQGGLGEVGSQGPMGPQGIRGAMGMIGHKGDLGARGLG
GDPGPQGVSGATGDRGQRGVMGELGPQGETGVLGPRGITGVPGPKGDAGLSGVDGREGIP
GMPGAKGGFGKSGVPGEVGLQGLPGLPGVPGQKGLSGIKGDDGQPGLPGTLGPAGKAGER
GEQGELGPVGPIGEPGAIGVKGPLGSAGKPGGRGPKGDPGLPGLPGPHGLPGVKGERAER
GEGGPKGEQGAQGDEGNPGDKGAIGDSGEYGAKGELGNLGDTGKKGPEGSRGQPGIEGPP
GTPGPRGMQGNRGPPGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPESGVA
GLPGKPGPPGSPGTPGDNGFPGQGGARGLPGLKGPQGIIGVKGPKGELGDRGSRGPTARG
PKGQPGSPGLPGEPGKPGYGQDGRDGQRGPPGIHGQSGVPGPPGAAGPNGYCDPSSCNLQ
AGAQLVDVKGPAGN
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggtccccagcgttagagggccacttttggttctgcttctgcagcttgtcctt
atctgctccgctcaaaggagccaaggccctactggacctggaggtgtcccaggaattgat
ggcattgcaggagaaagaggagaagatggcgatgagggactttctggacctgatggagat
gaaggtaaacctggctcttcaggattacctggaatccctggaaatgatggtttgaccggc
ccttttggagatccagggcccgatggtccccttggacagaaaggtgaacctggactatct
ggacctcgtggagcagctggtgttgggccagacggaccccccggaccacccgggcctgga
ggacttttgggtgaagtgggaaaagttggaccacttgggtctataggtgtgagagggcct
cagggaccccgtggaccaactgggtccagaggtgcagctggaatgcaaggcagtgccgac
ctgtgtccaaactcttgtccacctgggacctctggacaccctggccttcctggcatgaag
ggccacaaaggtgtaaaaggtgaagtcggagaacctgggaagcaagggcacaagggtgag
gagggagaccagggaggcctaggagaggtcggatcccaaggaccaatgggtcctcaggga
attcgtggagccatgggaatgatcggccacaagggagatttgggagctcgaggtcttggt
ggagatccaggtccccagggtgtttcaggggcaactggggatcgaggccagagaggtgtg
atgggcgagcttgggcctcaaggcgaaacgggtgttctagggccgagaggaatcacaggt
gttccaggtcccaagggagacgctggtttgtctggtgtggacggtcgcgaaggtattcct
gggatgccgggagcaaagggaggctttgggaagtcaggcgttcctggagaggtcggactt
caggggcttcctggtttgcctggtgtacctggacaaaaaggcttgagtggcattaaggga
gacgatggtcaaccaggcctccccggaacattgggacctgctggcaaagcaggtgagcgt
ggagaacagggagagctgggacctgttggacctattggtgaacctggagctataggtgtg
aaaggccccctaggttcagccggcaagccaggtggcaggggacccaaaggtgaccccggc
cttcctggtctcccgggtcctcatggcctgcctggtgtgaagggagagagggcagaacgt
ggagaaggaggacccaaaggagagcagggagcacaaggtgatgagggaaaccccggagac
aaaggggctatcggtgattcaggagaatatggagctaaaggagagctcggtaaccttggc
gacactggcaaaaaaggtccagagggaagtcgaggccagcctggcatcgaggggccgcct
ggcacacccggaccgcggggcatgcaggggaacaggggtccacctggagtcagagggtcc
cagggtcctgcgggtaaagagccaagcgatcagcacatcaaacaagtttgcatgcgcgtc
atgcaagaacagctggcacagttagctgctagcttaaggaggccagagtcgggtgtagct
ggtttacctggaaaacctggacctccaggatcgcctgggactccaggagacaatggcttc
ccagggcagggtggagcaagaggccttccgggactcaaagggccacaaggaattattgga
gtgaaaggaccaaaaggtgaattgggagacagaggctccagagggcccactgcgcgagga
cctaaaggtcagccaggatctcccggacttcctggtgagccaggcaagcctggctacggt
caggatggtcgggacgggcagagaggacctcctggtattcatggacagtccggtgtacct
gggcctcccggtgcagctggtcccaatggttattgcgacccgtcatcctgcaacctccag
gcaggagcccagctcgttgatgtgaagggacccgcagggaactaa
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